View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11207_low_9 (Length: 547)
Name: NF11207_low_9
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 519; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Complemental strand, 7703959 - 7703425
Alignment:
| Q |
1 |
agatattggagcagtgctaaaggggtttacacaagatcaatacaacagtctcatgaatttgcttcagcagtctaagacaaaagcttcatgtgcatttcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7703959 |
agatattggagcagtgctaaaggggtttacacaagatcaatacaacagtctcatgaatttgcttcagcagtctaagacaaaagcttcatgtgcatttcat |
7703860 |
T |
|
| Q |
101 |
tctaa-aacacagtatttttgttgttactaactttcatgccaatttaatttcagttccaagatatgttgctgtctttacttctaatttttgcaggacact |
199 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7703859 |
tctaccaacaaagtatttttgttgttactaactttcatgccaatttaatttcagttccaagatatgttgctgtctttacttctaatttttgcaggacact |
7703760 |
T |
|
| Q |
200 |
accaagaggatgattggtacaactagattagttggtagtttctacaaaattgattttccagaaaccgagtctttctctaattcagtttgccatattagtt |
299 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7703759 |
accaagaggatgattggtacaactagattagttggtagtttctacaaaattgattttccagaaaccgagtctttctctaattcagtttgccatattagtt |
7703660 |
T |
|
| Q |
300 |
tcaattctatttccacttgtaataccaataattgtttttcggccttttcacttttgtgtctctttcaaacgtgatatattaccggaaatctttgtttgac |
399 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7703659 |
tcaattctatttccacttgtaataccaataattgtttttcggccttttcacttttgtgtctctttcaaacgtgatatattaccggaaatctttgtttgac |
7703560 |
T |
|
| Q |
400 |
aaaaggaaagttatttctttctaacgattacgtgatgttagaaattttgcaggctggtccatcctttgggtcttgcaagaacatttattgttgaacaaga |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7703559 |
aaaaggaaagttatttctttctaacgattacgtgatgttagaaattttgcaggctggtccatcctttgggtcttgcaagaacatttattgttgaacaaga |
7703460 |
T |
|
| Q |
500 |
gtttaacatgatccttgtgttgtcctgttcatctc |
534 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
7703459 |
gtttaacatgatccttgtgttgtcctgttcatctc |
7703425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 484 - 523
Target Start/End: Original strand, 27150314 - 27150353
Alignment:
| Q |
484 |
ttattgttgaacaagagtttaacatgatccttgtgttgtc |
523 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27150314 |
ttattgttgaacaagagtttaacatgatccttgtgttgtc |
27150353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 38822950 - 38823017
Alignment:
| Q |
185 |
tttttgcaggacactaccaagaggatgattggtacaactagattagttggtagtttctacaaaattga |
252 |
Q |
| |
|
||||||||||| |||||||||| || |||||||||| ||||||| |||||| || |||||| |||||| |
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|
| T |
38822950 |
tttttgcaggaaactaccaagaagacgattggtacagctagattggttggtggtctctacataattga |
38823017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 17884374 - 17884307
Alignment:
| Q |
185 |
tttttgcaggacactaccaagaggatgattggtacaactagattagttggtagtttctacaaaattga |
252 |
Q |
| |
|
||||||||||| |||||||||| || |||||||||| ||||||| |||||| || |||||| |||||| |
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| T |
17884374 |
tttttgcaggaaactaccaagaagacgattggtacagctagattggttggtggtctctacataattga |
17884307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 484 - 534
Target Start/End: Original strand, 39367199 - 39367249
Alignment:
| Q |
484 |
ttattgttgaacaagagtttaacatgatccttgtgttgtcctgttcatctc |
534 |
Q |
| |
|
||||||||||| || |||||||||||| |||||||||||||||||||||| |
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|
| T |
39367199 |
ttattgttgaaaaaatgtttaacatgattcttgtgttgtcctgttcatctc |
39367249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 484 - 517
Target Start/End: Complemental strand, 31571771 - 31571738
Alignment:
| Q |
484 |
ttattgttgaacaagagtttaacatgatccttgt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
31571771 |
ttattgttgaacaagagtttaacatgatccttgt |
31571738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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