View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11208_high_2 (Length: 581)

Name: NF11208_high_2
Description: NF11208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11208_high_2
NF11208_high_2
[»] chr1 (7 HSPs)
chr1 (10-184)||(13492079-13492253)
chr1 (213-318)||(30735553-30735658)
chr1 (466-512)||(30735083-30735129)
chr1 (320-382)||(42837251-42837313)
chr1 (332-388)||(35599212-35599268)
chr1 (236-313)||(35599837-35599914)
chr1 (320-388)||(35598623-35598691)
[»] chr3 (1 HSPs)
chr3 (217-297)||(54310749-54310829)
[»] chr7 (2 HSPs)
chr7 (447-521)||(42790208-42790282)
chr7 (399-445)||(39703300-39703346)
[»] chr5 (1 HSPs)
chr5 (9-63)||(23146037-23146090)
[»] chr4 (1 HSPs)
chr4 (217-257)||(52364125-52364165)


Alignment Details
Target: chr1 (Bit Score: 163; Significance: 9e-87; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 10 - 184
Target Start/End: Complemental strand, 13492253 - 13492079
Alignment:
Q  10 ttctctcctagtgagaagtaaggttttttctcgttctctccttgtgagaagtttactttcaacaccttttaactttccctttcctttctcacttcaattc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13492253 ttctctcctagtgagaagtaaggttttttctcgttctctccttgtgagaagtttactttcaacacctttcaactttccctttcctttctcacttcaattc 13492154  T
Q  110 ccatggattctctccatcgtctccctctgagtgatgaagaggaagaattagaaatacaacctgatactttaccaa 184  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13492153 ccatggattctctccatcatctcccgctgagtgatgaagaggaagaattagaaatacaacctgatactttaccaa 13492079  T

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Target: chr1; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 213 - 318
Target Start/End: Complemental strand, 30735658 - 30735553
Alignment:
Q  213 tgcataaatgtattttgtattagatttcaataaagactacaatgatgctattgaataattctaattaaaatcattttcaatatcataagtcaagttacat 312  Q
    |||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||  ||||||||||||||||||||||| || |||||||||||    
T  30735658 tgcataaatgtattttgtattagatttcaataaatactacaatgatattattgaataatttaaattaaaatcattttcaatatcacaaatcaagttacat 30735559  T
Q  313 tcagtc 318  Q
    ||||||    
T  30735558 tcagtc 30735553  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 466 - 512
Target Start/End: Complemental strand, 30735129 - 30735083
Alignment:
Q  466 atttcaagcattggcaaccaaggaaattgacacaatcacaatcaata 512  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||    
T  30735129 atttaaagcattggcaaccaaggaaattgacacaatcagaatcaata 30735083  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 320 - 382
Target Start/End: Original strand, 42837251 - 42837313
Alignment:
Q  320 agaaaaagctaaaattcacacaatcgcatatcataatcaaagattttcaaaccttaatgtcaa 382  Q
    |||||||| || ||||||||||||| ||||||| |||||| |||||||||||| |||||||||    
T  42837251 agaaaaagttataattcacacaatcacatatcaaaatcaacgattttcaaaccctaatgtcaa 42837313  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 388
Target Start/End: Complemental strand, 35599268 - 35599212
Alignment:
Q  332 aattcacacaatcgcatatcataatcaaagattttcaaaccttaatgtcaaggattc 388  Q
    ||||||||||||| ||||||| |||||| |||||||||||| || ||||||||||||    
T  35599268 aattcacacaatcacatatcaaaatcaacgattttcaaaccctattgtcaaggattc 35599212  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 236 - 313
Target Start/End: Complemental strand, 35599914 - 35599837
Alignment:
Q  236 atttcaataaagactacaatgatgctattgaataattctaattaaaatcattttcaatatcataagtcaagttacatt 313  Q
    |||| ||||||||||||||||||  |||| |||||||  ||||  ||||||||||||| |||||| | ||||||||||    
T  35599914 attttaataaagactacaatgatattatttaataattgaaattcgaatcattttcaatttcataaatgaagttacatt 35599837  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 388
Target Start/End: Complemental strand, 35598691 - 35598623
Alignment:
Q  320 agaaaaagctaaaattcacacaatcgcatatcataatcaaagattttcaaaccttaatgtcaaggattc 388  Q
    ||||||||||| | ||||||||||| ||||||| ||||||  ||||||||||| || |||||| |||||    
T  35598691 agaaaaagctatatttcacacaatcacatatcaaaatcaacaattttcaaaccctattgtcaaagattc 35598623  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 217 - 297
Target Start/End: Original strand, 54310749 - 54310829
Alignment:
Q  217 taaatgtattttgtattagatttcaataaagactacaatgatgctattgaataattctaattaaaatcattttcaatatca 297  Q
    |||||||||| ||||| | ||||||||||||||||||||||| | ||||||||| |  ||||||||||| |||||||||||    
T  54310749 taaatgtattatgtataacatttcaataaagactacaatgatacgattgaataaataaaattaaaatcactttcaatatca 54310829  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 447 - 521
Target Start/End: Complemental strand, 42790282 - 42790208
Alignment:
Q  447 cccaaatttcgaaaccctaatttcaagcattggcaaccaaggaaattgacacaatcacaatcaataaaataatta 521  Q
    ||||||| | ||||||||||||| ||||||||| || ||||| |||||||||||||||||| |||| ||| ||||    
T  42790282 cccaaatattgaaaccctaatttgaagcattgggaagcaaggtaattgacacaatcacaatgaatataatgatta 42790208  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 445
Target Start/End: Original strand, 39703300 - 39703346
Alignment:
Q  399 aaatttgagaaatcaaggattgacaaacaatagaaaaaacataaaat 445  Q
    |||||||||||||||| |||||||  |||||||||||| ||||||||    
T  39703300 aaatttgagaaatcaaagattgacggacaatagaaaaatcataaaat 39703346  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 23146037 - 23146090
Alignment:
Q  9 tttctctcctagtgagaagtaaggttttttctcgttctctccttgtgagaagttt 63  Q
    |||||||||| |||||||||||| |||| |||| |||||||||||||||||||||    
T  23146037 tttctctccttgtgagaagtaag-ttttctctcattctctccttgtgagaagttt 23146090  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 52364165 - 52364125
Alignment:
Q  217 taaatgtattttgtattagatttcaataaagactacaatga 257  Q
    |||||||||| ||||| | ||||||||||||||||||||||    
T  52364165 taaatgtattatgtataacatttcaataaagactacaatga 52364125  T

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