View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11208_high_3 (Length: 425)
Name: NF11208_high_3
Description: NF11208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11208_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 15 - 404
Target Start/End: Original strand, 6083274 - 6083663
Alignment:
| Q |
15 |
aagtaaaaggcttgctaaaactgtgattgaaaattcttatcttaacaaatctattatcgcgaaagacaatttgattgatgatctgaggagacaattgaat |
114 |
Q |
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| T |
6083274 |
aagtaaaaggcttgctaaaactgtgattgaaaattcttatcttaacaaatctattatcgcgaaagacaatttgattgatgatctgagaagacaattgaat |
6083373 |
T |
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| Q |
115 |
caagcagacgtggatcgtaatgcattgatgattggattagagtctgttgagaaggataatacttctctgatgtatgaggctcgagtgcttcaaaaggaac |
214 |
Q |
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| T |
6083374 |
caagcagacgtggatcgtaatgcattgatgattggattagagtctgttgagaaggataatacttctctgatgtatgaggctcgagtgcttcaaaaggaac |
6083473 |
T |
|
| Q |
215 |
ttgatattcgaaatgaagtccaattttcaagagtaatgctttcgcaaacagcgtcaaaactgttgcaacttgaatctgagattgattccaaaaaccaagt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6083474 |
ttgatattcgaaatgaagtccaattttcaagagtaatgctttcgcaaacagcgtcaaaactgttgcaacttgagtctgagattgattccaaaaaccaagt |
6083573 |
T |
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| Q |
315 |
agcatcggagcagcctagaagtcatgttgcattgcaagagttctctctttcgtcaatgtattacattggcattgatgacaatgttagctg |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| | | ||||||| ||||||||||| |||||||||||||||||| |
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| T |
6083574 |
agcatcggagcagcctagaagtcatgttgcattgcaagagttatctttggcatcaatgtcttacattggcagtgatgacaatgttagctg |
6083663 |
T |
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