View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11208_high_4 (Length: 250)
Name: NF11208_high_4
Description: NF11208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11208_high_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 37028480 - 37028241
Alignment:
| Q |
11 |
cacagatgccttatatgtggacactatataatagccaattattaattaaactaagttgtttactcaaatacacccttaaaagttacaacacacaagatat |
110 |
Q |
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| T |
37028480 |
cacagatgccgtatatgtggacactatataatagccaattattaattaaactaagttgtttactcaaatacacccttaaaagttacaacacacaagatat |
37028381 |
T |
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| Q |
111 |
aaatcttattttcttaggtaattaaaaccttaagactagcctataaagatgacaaaaccccataaacacattattagtagcacaaaaaagatgcttgcaa |
210 |
Q |
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| T |
37028380 |
aaatcttattttcttaggtaattaaaaccttaagactagcctataaagatgacaaaaccccatacacacattattagtagcacaaaaaagatgcttgcaa |
37028281 |
T |
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| Q |
211 |
cacaagtaaaccaacttcattgttcactaatctagaagtt |
250 |
Q |
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| T |
37028280 |
cacaagtaaaccaaattcattgttcactaatctagaagtt |
37028241 |
T |
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