View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11208_low_1 (Length: 880)
Name: NF11208_low_1
Description: NF11208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11208_low_1 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 770; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 770; E-Value: 0
Query Start/End: Original strand, 10 - 880
Target Start/End: Original strand, 6353356 - 6354228
Alignment:
| Q |
10 |
ggagcagagacggtaagctgttttgacagtataagctccacccaccgttgacttccagattcgagaatcagttcttgatcgagcaaatagtggaatggac |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6353356 |
ggagcagagacggtaagctgttttgacagtataagctccacccaccgttgacttccagattcgagaatcagttcttgatcgagcaaatagtggaatggac |
6353455 |
T |
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| Q |
110 |
agaattgtggttacatcagtagcatcaaacagattttgtatgacaggaatgttccaagaattcagacccgggtttagcaaagcatttaccataagatctt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6353456 |
agaattgtggttacatcagtagcatcaaacagattttgtatgacaggaatgttccaagaattcagacccgggtttagcaaagcatttaccataagatctt |
6353555 |
T |
|
| Q |
210 |
tgtagtgaagaggtggcgaggtggagggtttgtgacctcgccaccattcaacattgtttcagagagaccaactccagtgcagatttattaggaaaaaaga |
309 |
Q |
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| T |
6353556 |
tgtagtgaagaggtggcgaggtggagggtttgtgacctcgccaccattcaacattgtttcagagagaccaactcccgtgcagatttattaggaaaaaaga |
6353655 |
T |
|
| Q |
310 |
tttgatgctcttttctttctagtttatgttaattataactgtaatttccttcatgcccttttgttaacctacacctcttattatnnnnnnnnn--ctaca |
407 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6353656 |
tttgatgctcttttctttctggtttatgttaattataactgtaatttccttcatgcccttttgttaacctacacctcttattataaaaaaaaaaactaca |
6353755 |
T |
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| Q |
408 |
aacactttttaaatgaaactcacaaaatactttcgtacaagggacagttatgttagaggtcgatagaaccaacgagggaaatatatcatttcaagggatc |
507 |
Q |
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| T |
6353756 |
aacactttttaaatgaaactcacaaaatactttcgtacaaggaacagttatgttagaggtcgatagaaccaacgagggaaatatatcatttcaagggatc |
6353855 |
T |
|
| Q |
508 |
tatttttcgtgagtataatcatcaatggagagtcatgcaagtagcattctggtgttgtctagttgaaacatgccttgaaatctcatgttggatatatatg |
607 |
Q |
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| T |
6353856 |
tatttttcgtgagtataatcatcaatggagagtcatgcaagtagcattctggtgttgtctagttgaaacatgccttgaaatctcatgttggatatatatg |
6353955 |
T |
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| Q |
608 |
aagaaaaataactcttttcggctactgttgtatgtgctggacacagggactgttgtcctaggtgcaacaataacgcgtttcaggaaggtcctgcttctgg |
707 |
Q |
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| T |
6353956 |
aagaaaaataactcttttcggctactgttgtatgtgctggacacagggactgttgtcctaggtgcaacaataacacgtttcaggaaggtcctgcttctgg |
6354055 |
T |
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| Q |
708 |
tagctgtgtagaggtcagtagagtacaaactgcgttggccgcatgggctgtgcgaggcgcaaagtgcagtgcaagtgtctgnnnnnnnctttctttctga |
807 |
Q |
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| T |
6354056 |
tagctgtgtagaggtcagtagagtacaaactgcgttggccgcatgggctgtgcgaggcgcaaagtgcagtgcaagtgtctgtttttttctttctttctga |
6354155 |
T |
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| Q |
808 |
ggtgtataagaggccaagacnnnnnnnngtgtgtttaatcttgtcaaaccaaaggaggaaacttttagtaatt |
880 |
Q |
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| T |
6354156 |
ggtgtataagaggccaagacttttttttgtgtgtttaatcttgtcaaatcaaaggaggaaacttttagtaatt |
6354228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 8e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 100 - 243
Target Start/End: Original strand, 23601120 - 23601262
Alignment:
| Q |
100 |
tggaatggacagaattgtggttacatcagtagcatcaaacagattttgtatgacaggaatgttccaagaattcagacccgggtttagcaaagcatttacc |
199 |
Q |
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|||||||||||||||| ||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
23601120 |
tggaatggacagaatttctgttacatcaatagcatcaaacaaattttgtatgacagaaatgttccaagaattcagactcgggtttagcaaagca-ttacc |
23601218 |
T |
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| Q |
200 |
ataagatctttgtagtgaagaggtggcgaggtggagggtttgtg |
243 |
Q |
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|||||| ||| ||||||||||||||| |||| ||||||||||| |
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| T |
23601219 |
gtaagatatttatagtgaagaggtggcaaggttgagggtttgtg |
23601262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 23601072 - 23601121
Alignment:
| Q |
10 |
ggagcagagacggtaagctgttttgacagtataagctccacccaccgttg |
59 |
Q |
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| T |
23601072 |
ggagcagagacaataagttgttttgacagtataaactccatccaccgttg |
23601121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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