View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11208_low_4 (Length: 360)
Name: NF11208_low_4
Description: NF11208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11208_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 45745608 - 45745948
Alignment:
| Q |
1 |
tggcagatctagcaatcatagactgaaacatatctgcgtatcgattctattcaagaaaataataatcaattaaaacgatatactaaacaaacctacacaa |
100 |
Q |
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| T |
45745608 |
tggcagatctagcaatcatagactgaaacatatctgcgtatcgattctattcaagaaaataataatcaattaaaacgatatactaaacaaacctacacaa |
45745707 |
T |
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| Q |
101 |
acattgatggcaattnnnnnnnnnnnnctatatcactcagaaaatggtggctacaaaatttcctatcaaaatcggttaaattacaaagaacaccatgagg |
200 |
Q |
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| T |
45745708 |
acattgatggtaattaaaaaacaaaaactgtatcgctcagaaaatggtggctacaaaatttcctatcaaaatcggttaaattacaaagaacaccatgagg |
45745807 |
T |
|
| Q |
201 |
tagagtatttgataatcataccgcatccatcaaagtttccacaagtgctaaactgttgattattactatcccagtatctctcgtagcttcagtgacaaag |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45745808 |
tagaatatttgataatcataccgcatccatcaaagtttccacaagtgctaaactgttgattattactatcccagtatctctcgtagcttcagtgacaaag |
45745907 |
T |
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| Q |
301 |
ccagcgggtttaggaccaatacaagaagaaatcaaccgtgc |
341 |
Q |
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| T |
45745908 |
ccagcgggtttaggaccaatacaagaagaaatcaaccgtgc |
45745948 |
T |
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