View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11208_low_5 (Length: 308)
Name: NF11208_low_5
Description: NF11208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11208_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 298
Target Start/End: Complemental strand, 3683495 - 3683211
Alignment:
| Q |
16 |
caaccacaagatttatgcgcaaatggctactgcactccatctaaagagacaaattaatatccgatttcaattcttaactatattttatttagcttttgct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3683495 |
caaccacaagatttatgcgcaaatggctactgcagtccatctaaagagacaaattaatatccgatttcaattcttaactatattttatttagcttttgct |
3683396 |
T |
|
| Q |
116 |
cgaacaaagattagtctagtgaccccttttctcnnnnnnnnn--ttaggacaatgtgcaattgatgatgggaaaataataaacgtaccagagcaagtctt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3683395 |
cgaacaaagattagtctagtgaccccttttctcaaaaaaaaaaattaggacaatgtgcaattgatgatgggaaaataataaacgtaccagagcaagtctt |
3683296 |
T |
|
| Q |
214 |
gctaacggtgagcttgtatacaaggactataaggccaataatatggattgatccagaggctatgtagaaaaaatgagggtctgtg |
298 |
Q |
| |
|
| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3683295 |
gttaacgatgagcttgtatacaaggactacaaggccaataatatggattgatccagaggctatgtagaaaaaatgagggtctgtg |
3683211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 287
Target Start/End: Complemental strand, 3661482 - 3661419
Alignment:
| Q |
224 |
agcttgtatacaaggactataaggccaataatatggattgatccagaggctatgtagaaaaaat |
287 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||| || | |||||||| || ||||||||| |
|
|
| T |
3661482 |
agcttgtatatgaggacaataaggccaataatatggactgtttcagaggctttgaagaaaaaat |
3661419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University