View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11209_high_4 (Length: 384)
Name: NF11209_high_4
Description: NF11209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11209_high_4 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 384
Target Start/End: Complemental strand, 43256165 - 43255800
Alignment:
| Q |
19 |
agcatacggtgagataatcaacggccgatttgcaatgttgggagcagccggagctatagcacctgaaattctcggcaaagcaggtttaattcccgctgaa |
118 |
Q |
| |
|
||||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
43256165 |
agcatacggcgagataatcaacggccgcttcgcaatgttgggagcagcaggagctatagcacctgaaattctcggcaaagcaggtttaattcccgcggaa |
43256066 |
T |
|
| Q |
119 |
acagcactcccttggttccaaaccggcgtgattccaccggcaggaacatacaactactgggcagacaactacacactctttgtgatggaaatggcattca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43256065 |
acagcactcccttggttccaaaccggcgtgattccaccagcaggaacatacaactactgggcagacaattacacactctttgtgatggaaatggcattca |
43255966 |
T |
|
| Q |
219 |
tgggatttgcagaacacagaagactccaagattggtacaatcctggttccatgggaaaacaatacttcttaggacttgagaaagggcttggaggttccgg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43255965 |
tgggatttgcagaacacagaagactccaagattggtacaatcctggttccatgggaaaacaatacttcttaggacttgagaaagggcttggaggttccgg |
43255866 |
T |
|
| Q |
319 |
cgaaccagcataccctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcatt |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43255865 |
cgaaccagcataccctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcatt |
43255800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 384
Target Start/End: Complemental strand, 43259431 - 43259066
Alignment:
| Q |
19 |
agcatacggtgagataatcaacggccgatttgcaatgttgggagcagccggagctatagcacctgaaattctcggcaaagcaggtttaattcccgctgaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
43259431 |
agcatacggtgagataatcaacggccgatttgcaatgttgggagcagccggagctatagcacctgaaattcttggcaaagcaggtttaattcccgcggaa |
43259332 |
T |
|
| Q |
119 |
acagcactcccttggttccaaaccggcgtgattccaccggcaggaacatacaactactgggcagacaactacacactctttgtgatggaaatggcattca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43259331 |
acagcactcccttggttccaaaccggcgtgattccaccagcgggaacatacaactactgggcagacaattacacactctttgtgatggaaatggcattca |
43259232 |
T |
|
| Q |
219 |
tgggatttgcagaacacagaagactccaagattggtacaatcctggttccatgggaaaacaatacttcttaggacttgagaaagggcttggaggttccgg |
318 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43259231 |
tgggatttgcagaacacagaagattccaagattggtacaatcctggctccatgggaaaacaatacttcttaggacttgagaaagggcttggaggttccgg |
43259132 |
T |
|
| Q |
319 |
cgaaccagcataccctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcatt |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43259131 |
cgaaccagcataccctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcatt |
43259066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 269 - 384
Target Start/End: Complemental strand, 43247918 - 43247803
Alignment:
| Q |
269 |
atgggaaaacaatacttcttaggacttgagaaagggcttggaggttccggcgaaccagcataccctggtggacctatatttaaccctcttggttttggta |
368 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43247918 |
atgggaaaacaatactttttaggacttgagaaaggtcttggcggttccggtgaaccagcataccctggtggacctatatttaaccctcttggttttggta |
43247819 |
T |
|
| Q |
369 |
aagatgagaaatcatt |
384 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
43247818 |
aagatgagaaatcatt |
43247803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University