View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11209_high_5 (Length: 313)
Name: NF11209_high_5
Description: NF11209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11209_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 7962294 - 7962415
Alignment:
| Q |
17 |
attaatggtctctgagagtcggatgagggcgattacttgtttactcctt-----tccaacagtccattttctaactagagagtattctctggaataaact |
111 |
Q |
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| T |
7962294 |
attaatggtctttgagagtcggatgagggcgattacttctttactccttgatattccaacagtccattttctaactagagagtattctctggaataaacc |
7962393 |
T |
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| Q |
112 |
aaattcaatgatttcaccccaa |
133 |
Q |
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| T |
7962394 |
aaattcaatgatttcaccccaa |
7962415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 139 - 237
Target Start/End: Original strand, 7962596 - 7962694
Alignment:
| Q |
139 |
tgtccttcaatgcaaatgtcgcctcacgatgatctttgattagttgacctcctacccatctatatgtaccaagtattaaatcttctagattgagacggt |
237 |
Q |
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| T |
7962596 |
tgtcctgcaatgcagtcgtcgtctcacgataatctttgatttgttgacctcctacccatctatatttaccaagtattaaatcttctagattgagacggt |
7962694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 7973449 - 7973552
Alignment:
| Q |
199 |
tatatgtaccaagtattaaatcttctagattgagacggttctttaaacaaggaaacatgaacaagaatatcacatgtgtaaacttcttcacatgcacagc |
298 |
Q |
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| T |
7973449 |
tatatttaccaagtgttacagattctggattgagacggt-ctttaaacaaggaaacaagaacaggagtatcagaggtgtaaacttcttcacatgcacaac |
7973547 |
T |
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| Q |
299 |
ctatg |
303 |
Q |
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||||| |
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| T |
7973548 |
ctatg |
7973552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 47293024 - 47292907
Alignment:
| Q |
21 |
atggtctctgagagtcggatgagggcgattacttgtttactcctt-----tccaacagtccattttctaactagagagtattctctggaataaactaaat |
115 |
Q |
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|||||| |||||| |||||||| ||||||||||| || || ||| |||||||||||||||||||||| ||||||||| |||| ||| ||| | | |
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| T |
47293024 |
atggtccctgagactcggatgacggcgattacttcttcacctcttgatattccaacagtccattttctaactcgagagtattttctgaaatcaaccatac |
47292925 |
T |
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| Q |
116 |
tcaatgatttcaccccaa |
133 |
Q |
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| T |
47292924 |
acaatgatttcaccccaa |
47292907 |
T |
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