View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11209_low_2 (Length: 542)
Name: NF11209_low_2
Description: NF11209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11209_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 13 - 526
Target Start/End: Original strand, 44964828 - 44965341
Alignment:
| Q |
13 |
cagagaccaacaacataggtgctcttgcaccaataacgtagcattctattctaggacatcaatttgatcctttgcatgcggataacaacatagcatatgt |
112 |
Q |
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| T |
44964828 |
cagagaccaacaacataggtgctcttgaaccaataacgtagcattctattctaggacatcaatttgatcctttgcatgcggataacaacatagcatatgt |
44964927 |
T |
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| Q |
113 |
gatacattcaatacattacaacacaacatatttttctttcatgttgcactatcccatactccaaacaatgctacttttaatttagcttcattgttgccaa |
212 |
Q |
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| T |
44964928 |
gatacattcaatacattacaacacaacatatttttctttcatgttgcactatcccatactccaaacaatgctacttttaatttagcttcattgttgccaa |
44965027 |
T |
|
| Q |
213 |
atccacatctatacagacatgggtcacaaagaaaaatcacgaaaagataagagattgcaagaaatatcccttttgagaaccattccttattctgatcacc |
312 |
Q |
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| T |
44965028 |
atccacatctatacagacatgggtcacaaagaaaaatcacgaaaagataagagattgcaagaaatatcccttttgagaaccattccttattctgatcacc |
44965127 |
T |
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| Q |
313 |
agaggttaatttgaactataattattttattgttcaataatattaacttctagttagtttttccttctgattatcatatgaacatatgattgttaaattc |
412 |
Q |
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| T |
44965128 |
agaggttaatttgaactataattattttattgttcaataatattaacttctagttagtttttccttctgattatcatatgaacatatgattgttaaattc |
44965227 |
T |
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| Q |
413 |
gatgcattcacccaatcaacacgtcggtggtcgtcaaatcaagattgaataatccatatatatttcaatccagtccgcttgatctcgacccaatgaccac |
512 |
Q |
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| T |
44965228 |
gatgcattcacccaatcaacacgtcggtggtcgtcagatcaagattgaataatccatatatatttcaatccagtccgcttgatttcgatccaatgaccac |
44965327 |
T |
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| Q |
513 |
caatgtacggattg |
526 |
Q |
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| T |
44965328 |
caatgtacggattg |
44965341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 254 - 319
Target Start/End: Original strand, 40068400 - 40068465
Alignment:
| Q |
254 |
aaaagataagagattgcaagaaatatcccttttgagaaccattccttattctgatcaccagaggtt |
319 |
Q |
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| T |
40068400 |
aaaagataagagatcgcaagaaatatcgcttttgaggaccattccttattctgatcaccaaaggtt |
40068465 |
T |
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