View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11209_low_3 (Length: 486)
Name: NF11209_low_3
Description: NF11209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11209_low_3 |
 | |
|
| [»] scaffold0190 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 10 - 468
Target Start/End: Complemental strand, 7606404 - 7605946
Alignment:
| Q |
10 |
gtgagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcat |
109 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7606404 |
gtgagatgaacaaattaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcat |
7606305 |
T |
|
| Q |
110 |
gtccaataataatttcatatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7606304 |
gtccaataataatttcatatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatat |
7606205 |
T |
|
| Q |
210 |
aaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtg |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7606204 |
aaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtg |
7606105 |
T |
|
| Q |
310 |
acccacatttcatggatgtcgtgaccaactaatgcagcttcaaggtttgtaaaatcgatttgttagcatatttgtccaaatgcttaaatttgtattttgg |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7606104 |
acccacatttcatggatgtcgtgaccaactaatgcggcttcaaggtttgtaaaatcgatttgttagcatatttgtccaaatgcttaaatttgtattttgg |
7606005 |
T |
|
| Q |
410 |
atataactatgaataactttatgacattcaagtctcttttcagtatattttgataaaga |
468 |
Q |
| |
|
|||||||||||||||| | |||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
7606004 |
atataactatgaataagtgtatgacgttcaagtctctttttagtatattttgataaaga |
7605946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 347
Target Start/End: Complemental strand, 7637233 - 7636895
Alignment:
| Q |
12 |
gagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctag---ca |
108 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||| ||||| |||||| || |
|
|
| T |
7637233 |
gagatgaacaagttaattgcttcacacactgatgagaagttgaagaatcattacgagtcttggttaagaaatccaagcttttttaggcttgctaagaaca |
7637134 |
T |
|
| Q |
109 |
tgtccaataataatttcatatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggata |
208 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | ||||||||||||||||| |
|
|
| T |
7637133 |
tggtaaaaaataatttcatatccattagtagttctccatggtttgatgtttatggtaatgattttggatggggaaagcctctggcagttcgtagtggata |
7637034 |
T |
|
| Q |
209 |
taaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagt |
308 |
Q |
| |
|
||||||||||||| || | | |||||||| |||||||||||||||||||| ||||||||||| ||||||||| || ||||||||| |||||||| | |
|
|
| T |
7637033 |
taaaataaatggacttattacggtatttgccggaatagaagaaggtagtatagaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaat |
7636934 |
T |
|
| Q |
309 |
gacccacatttcatggatgtcgtgaccaactaatgcagc |
347 |
Q |
| |
|
||||| ||||||||||||| ||| |||||||||||||| |
|
|
| T |
7636933 |
gaccccaatttcatggatgttgtgtccaactaatgcagc |
7636895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 10 - 345
Target Start/End: Complemental strand, 7615418 - 7615083
Alignment:
| Q |
10 |
gtgagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcat |
109 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| | ||| ||| |
|
|
| T |
7615418 |
gtgagatgaacaagttaattgtttcacacactgatgagaagttgaagaatcactacgagtcttggttaagaaatccaagctttgctaggtatcctaacat |
7615319 |
T |
|
| Q |
110 |
gtccaataataatttcatatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatat |
209 |
Q |
| |
|
| | || |||||||||||| ||||||| |||||||| |||||||||||||||||||||||||| || |||||||| ||| | |||||||||||||||||| |
|
|
| T |
7615318 |
ggcaaaaaataatttcatagccattagcagttctccgtggtttgatgtttatggtaatgattttggttggggaaagcctgtggcagttcgtagtggatat |
7615219 |
T |
|
| Q |
210 |
aaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtg |
309 |
Q |
| |
|
||| ||||||| || | | || |||||||||||||||||||||||||| || |||||||| |||||| | | || |||||||||||||||||| || |
|
|
| T |
7615218 |
aaaggaaatggacttattacggtttttgctggaatagaagaaggtagtatagatcttcaagtttgtctttcacatgagattttggaggcaatgggaaatg |
7615119 |
T |
|
| Q |
310 |
acccacatttcatggatgtcgtgaccaactaatgca |
345 |
Q |
| |
|
|||| || ||||||||||| | | |||||||||||| |
|
|
| T |
7615118 |
accctcaattcatggatgttgcgtccaactaatgca |
7615083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 14 - 371
Target Start/End: Original strand, 7656092 - 7656446
Alignment:
| Q |
14 |
gatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtcc |
113 |
Q |
| |
|
|||||| ||||||||||||| ||| || |||| || || |||||| | |||||||| ||||| |||||||||| |||| ||||| ||| |||| || | |
|
|
| T |
7656092 |
gatgaataagttaattgctttgcactcgaatgaaaaattaaagaatgattatgagtcatggttgagaaatccaaactttattaggcttgatagcttgagc |
7656191 |
T |
|
| Q |
114 |
aataataatttcatatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaa |
213 |
Q |
| |
|
| ||| ||||| | ||||||| ||||||||| |||||||||||||||||||||||| ||||||||||| ||| | ||||||||||||||| |||||| |
|
|
| T |
7656192 |
actaagaattttttggccattagcagttctccaaagtttgatgtttatggtaatgattttggatggggaaagcctgtggcagttcgtagtggaaataaaa |
7656291 |
T |
|
| Q |
214 |
taaatggaattgtaaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgaccc |
313 |
Q |
| |
|
||||||||| || || ||||||||||||||||||| ||| |||||||||||||| ||||||||||||||| |||||||||||||||||| ||| || |
|
|
| T |
7656292 |
caaatggaatggtttgtgcctttgctggaatagaagaagctagcattgaccttcaagtgtgtcttccttacaagattttggaggcaatgggaaatgatcc |
7656391 |
T |
|
| Q |
314 |
acatttcatggatgtcgtgaccaactaatgcagcttcaaggtttgtaaaatcgatttg |
371 |
Q |
| |
|
| ||||||||| | || ||||||||||||| ||||| |||| ||| | |||||| |
|
|
| T |
7656392 |
tgagttcatggatatggt---caactaatgcagcgtcaagatttgaaaacttgatttg |
7656446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 197 - 345
Target Start/End: Complemental strand, 7628669 - 7628521
Alignment:
| Q |
197 |
tcgtagtggatataaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggag |
296 |
Q |
| |
|
|||||||||||||||||| || ||| |||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||| || |||||||| |
|
|
| T |
7628669 |
tcgtagtggatataaaatgaaaggacttgttaatgtatttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggag |
7628570 |
T |
|
| Q |
297 |
gcaatgggaagtgacccacatttcatggatgtcgtgaccaactaatgca |
345 |
Q |
| |
|
|||||||||| |||||| || || ||||||| ||| |||||||||||| |
|
|
| T |
7628569 |
gcaatgggaaatgaccctcaatttgtggatgttgtgtccaactaatgca |
7628521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 12 - 122
Target Start/End: Complemental strand, 7633556 - 7633443
Alignment:
| Q |
12 |
gagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggtta---agaaatccaagctttgttagggttgctagca |
108 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
7633556 |
gagatgaacaagttaattgcttcacacactaatgagaagctgaaaaatcactatgagtcttggttaagaagaaatccaggctttgttagggttgctagca |
7633457 |
T |
|
| Q |
109 |
tgtccaataataat |
122 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
7633456 |
tgaccaataataat |
7633443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 7628789 - 7628708
Alignment:
| Q |
10 |
gtgagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctt |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
7628789 |
gtgagatgaacaagttaattgcttcacacactgatgagatgttgaagaatcactacgagtcttggttaaaaaatccaagctt |
7628708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 169
Target Start/End: Complemental strand, 39097738 - 39097703
Alignment:
| Q |
134 |
tagtagttctccatggtttgatgtttatggtaatga |
169 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39097738 |
tagtagttctccaaggtttgatgtttatggtaatga |
39097703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 39088060 - 39088014
Alignment:
| Q |
135 |
agtagttctccatggtttgatgtttatggtaatgatttcggatgggg |
181 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||| || ||||| |
|
|
| T |
39088060 |
agtagttctccaaggtttgatgtttatgataatgattttggttgggg |
39088014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 60 - 471
Target Start/End: Original strand, 8941738 - 8942148
Alignment:
| Q |
60 |
cactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttcatatccattagtagttctccatggtttgatgttt |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8941738 |
cactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttcttatccattagtagttctccatggtttgatgttt |
8941837 |
T |
|
| Q |
160 |
atggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtat |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8941838 |
atggtaatgatttcggatggggaaaacctatagcagt-cgtagtggatataaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtat |
8941936 |
T |
|
| Q |
260 |
tgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatggatgtcgtgaccaactaatgcagcttcaaggtttgt |
359 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8941937 |
tgaccttcaagtatgtcttccttacgaggttttggaggcaatgggaagtgacccacgtttcatggatgtcgtgaccaaataatgcagcttcaaggtttgt |
8942036 |
T |
|
| Q |
360 |
aaaatcgatttgttagcatatttgtccaaatgcttaaatttgtattttggatataactatgaataactttatgacattcaagtctcttttcagtatattt |
459 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8942037 |
aaaatcgatttgttagcatatttgtccagatgcttaaatttgtattttggatataactatgaataactttatgatgttcaagtctcttttcagtatattt |
8942136 |
T |
|
| Q |
460 |
tgataaagatga |
471 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8942137 |
tgataaagatga |
8942148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 10 - 345
Target Start/End: Original strand, 8936052 - 8936378
Alignment:
| Q |
10 |
gtgagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcat |
109 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| |
|
|
| T |
8936052 |
gtgagatgaacaagttaattgctttacacactgatgagaagttgaagaatcactatgagtcttggttaagaaatccaagcttt---ag------taacat |
8936142 |
T |
|
| Q |
110 |
gtccaataataatttcatatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatat |
209 |
Q |
| |
|
| | || || ||||||||| ||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||| |||||| |||| |||||||| |
|
|
| T |
8936143 |
gccaaaaaagaatttcatagccattagcagttctccgtggtttgatgtttatggtaatgattttggatggggaaagcctgtagcaggtcgtggtggatat |
8936242 |
T |
|
| Q |
210 |
aaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtg |
309 |
Q |
| |
|
||| ||||||| || | | |||||||| |||||||||||||||||||||||||||||||| |||||||| || || |||||||||||||||||| || |
|
|
| T |
8936243 |
aaagcaaatggacttattacagtatttgccggaatagaagaaggtagtattgaccttcaagtttgtcttccatatgagattttggaggcaatgggaaatg |
8936342 |
T |
|
| Q |
310 |
acccacatttcatggatgtcgtgaccaactaatgca |
345 |
Q |
| |
|
|||| || ||||||||||| | | |||||||||||| |
|
|
| T |
8936343 |
accctcaattcatggatgttgcgtccaactaatgca |
8936378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 12 - 347
Target Start/End: Original strand, 8913546 - 8913877
Alignment:
| Q |
12 |
gagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctag---ca |
108 |
Q |
| |
|
||||||||||||||||||||||||||| | || ||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
8913546 |
gagatgaacaagttaattgcttcacacgctgacgagaagttgaagaatcattacgagtcttggttaagaaatccaagctttgttaggcttgctaagaaca |
8913645 |
T |
|
| Q |
109 |
tgtccaataataatttcatatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggata |
208 |
Q |
| |
|
|| || | ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||| | ||||||||||||||||| |
|
|
| T |
8913646 |
tggtaaaaactaatttcatatccattagtagttctccatagtttgatgtttatggtaatgat-------ggggaaagcctgtggcagttcgtagtggata |
8913738 |
T |
|
| Q |
209 |
taaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagt |
308 |
Q |
| |
|
||||||||||||| || | | ||||||| |||||||||||||||| ||| ||||||||||| ||||||||| || ||||||||| |||||||| | |
|
|
| T |
8913739 |
taaaataaatggacttattacagtatttgtcggaatagaagaaggtattatagaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaat |
8913838 |
T |
|
| Q |
309 |
gacccacatttcatggatgtcgtgaccaactaatgcagc |
347 |
Q |
| |
|
||||| ||||||||||||| ||| |||||||||||||| |
|
|
| T |
8913839 |
gaccccaatttcatggatgttgtgtccaactaatgcagc |
8913877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 8919071 - 8919184
Alignment:
| Q |
12 |
gagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggtt---aagaaatccaagctttgttagggttgctagca |
108 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||| |||| |||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
8919071 |
gagatgaacaaattaattgcttcacacactaatgagaagctgaaaaatcactatgagtcttggttaagaagaaatccagactttgttagggttgctagca |
8919170 |
T |
|
| Q |
109 |
tgtccaataataat |
122 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
8919171 |
tgaccaataataat |
8919184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 8938828 - 8938884
Alignment:
| Q |
10 |
gtgagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatg |
66 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8938828 |
gtgagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatg |
8938884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 147 - 328
Target Start/End: Original strand, 40147453 - 40147634
Alignment:
| Q |
147 |
tggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgtaaatgtatttgctggaatag |
246 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||| | |||||||| |||||| ||||||||| |||||| | | |||||||||||||| || |
|
|
| T |
40147453 |
tggtttgatgtttatggtaatgattttggatggggagaacctgtggcagttcgcagtggaaataaaataagtggaatgattactgtatttgctggaaaag |
40147552 |
T |
|
| Q |
247 |
aagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatggatgt |
328 |
Q |
| |
|
|||||||||| || ||| ||||||| ||||||||| ||||| |||||||||||||||||| ||||| | ||||||||||| |
|
|
| T |
40147553 |
aagaaggtagcatggactttcaagtgtgtcttcctcacaagattttggaggcaatgggaaatgaccatgacttcatggatgt |
40147634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 147 - 306
Target Start/End: Complemental strand, 8102486 - 8102327
Alignment:
| Q |
147 |
tggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgtaaatgtatttgctggaatag |
246 |
Q |
| |
|
||||||||||||||||| ||| |||| |||||||||||||| | |||||||| |||||| ||||| || |||| | | ||||||||||||||||| |
|
|
| T |
8102486 |
tggtttgatgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgtatttgctggaatag |
8102387 |
T |
|
| Q |
247 |
aagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaa |
306 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
8102386 |
aagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaa |
8102327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 138 - 342
Target Start/End: Complemental strand, 6500539 - 6500335
Alignment:
| Q |
138 |
agttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgtaaatgtatttg |
237 |
Q |
| |
|
||||| || ||||||||| |||||||||||||||| |||||||| ||||| | ||| |||| |||| | |||||||| |||| || || | |||||||| |
|
|
| T |
6500539 |
agttccccgtggtttgatatttatggtaatgattttggatgggggaaacccgtggcatttcgcagtgtaaataaaatagatggtatggttagtgtatttg |
6500440 |
T |
|
| Q |
238 |
ctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatggatgtcgtgaccaa |
337 |
Q |
| |
|
|||||| |||| |||||||||| ||||||||||| ||||||||||||||| |||||| |||||| | |||||| |||||||||||| ||| |||| |
|
|
| T |
6500439 |
ctggaaaagaataaggtagtatagaccttcaagtttgtcttccttacaagactttggaagcaatgagttatgaccctaatttcatggatgctgtgtccaa |
6500340 |
T |
|
| Q |
338 |
ctaat |
342 |
Q |
| |
|
||||| |
|
|
| T |
6500339 |
ctaat |
6500335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 11968861 - 11968807
Alignment:
| Q |
244 |
tagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggc |
298 |
Q |
| |
|
|||||||||||||||| ||| || |||| ||||||||||||||| |||||||||| |
|
|
| T |
11968861 |
tagaagaaggtagtatagactttgaagtgtgtcttccttacaagattttggaggc |
11968807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 4501 - 4452
Alignment:
| Q |
139 |
gttctccatggtttgatgtttatggtaatgatttcggatggggaaaacct |
188 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
4501 |
gttctccttggtttgatgtttatggtaatgattttggttggggaaaacct |
4452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 15745016 - 15745070
Alignment:
| Q |
134 |
tagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacct |
188 |
Q |
| |
|
||||||||| || ||||||||||||||||| |||||||| || |||||||||||| |
|
|
| T |
15745016 |
tagtagttcaccctggtttgatgtttatggcaatgattttggttggggaaaacct |
15745070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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