View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11209_low_4 (Length: 384)
Name: NF11209_low_4
Description: NF11209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11209_low_4 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 384
Target Start/End: Complemental strand, 43256165 - 43255800
Alignment:
| Q |
19 |
agcatacggtgagataatcaacggccgatttgcaatgttgggagcagccggagctatagcacctgaaattctcggcaaagcaggtttaattcccgctgaa |
118 |
Q |
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| T |
43256165 |
agcatacggcgagataatcaacggccgcttcgcaatgttgggagcagcaggagctatagcacctgaaattctcggcaaagcaggtttaattcccgcggaa |
43256066 |
T |
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| Q |
119 |
acagcactcccttggttccaaaccggcgtgattccaccggcaggaacatacaactactgggcagacaactacacactctttgtgatggaaatggcattca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43256065 |
acagcactcccttggttccaaaccggcgtgattccaccagcaggaacatacaactactgggcagacaattacacactctttgtgatggaaatggcattca |
43255966 |
T |
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| Q |
219 |
tgggatttgcagaacacagaagactccaagattggtacaatcctggttccatgggaaaacaatacttcttaggacttgagaaagggcttggaggttccgg |
318 |
Q |
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| T |
43255965 |
tgggatttgcagaacacagaagactccaagattggtacaatcctggttccatgggaaaacaatacttcttaggacttgagaaagggcttggaggttccgg |
43255866 |
T |
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| Q |
319 |
cgaaccagcataccctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcatt |
384 |
Q |
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| T |
43255865 |
cgaaccagcataccctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcatt |
43255800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 384
Target Start/End: Complemental strand, 43259431 - 43259066
Alignment:
| Q |
19 |
agcatacggtgagataatcaacggccgatttgcaatgttgggagcagccggagctatagcacctgaaattctcggcaaagcaggtttaattcccgctgaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
43259431 |
agcatacggtgagataatcaacggccgatttgcaatgttgggagcagccggagctatagcacctgaaattcttggcaaagcaggtttaattcccgcggaa |
43259332 |
T |
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| Q |
119 |
acagcactcccttggttccaaaccggcgtgattccaccggcaggaacatacaactactgggcagacaactacacactctttgtgatggaaatggcattca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43259331 |
acagcactcccttggttccaaaccggcgtgattccaccagcgggaacatacaactactgggcagacaattacacactctttgtgatggaaatggcattca |
43259232 |
T |
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| Q |
219 |
tgggatttgcagaacacagaagactccaagattggtacaatcctggttccatgggaaaacaatacttcttaggacttgagaaagggcttggaggttccgg |
318 |
Q |
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| T |
43259231 |
tgggatttgcagaacacagaagattccaagattggtacaatcctggctccatgggaaaacaatacttcttaggacttgagaaagggcttggaggttccgg |
43259132 |
T |
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| Q |
319 |
cgaaccagcataccctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcatt |
384 |
Q |
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| T |
43259131 |
cgaaccagcataccctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcatt |
43259066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 269 - 384
Target Start/End: Complemental strand, 43247918 - 43247803
Alignment:
| Q |
269 |
atgggaaaacaatacttcttaggacttgagaaagggcttggaggttccggcgaaccagcataccctggtggacctatatttaaccctcttggttttggta |
368 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43247918 |
atgggaaaacaatactttttaggacttgagaaaggtcttggcggttccggtgaaccagcataccctggtggacctatatttaaccctcttggttttggta |
43247819 |
T |
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| Q |
369 |
aagatgagaaatcatt |
384 |
Q |
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| T |
43247818 |
aagatgagaaatcatt |
43247803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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