View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11209_low_6 (Length: 202)
Name: NF11209_low_6
Description: NF11209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11209_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 37802047 - 37801876
Alignment:
| Q |
14 |
tgaagcacgtatttaaaccttttattaaatttcaatgagcataccgaataagctaccatgagaagtctgatattgtaaccaagcttccattgggtcaaat |
113 |
Q |
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| T |
37802047 |
tgaagcacgtatttaaaccttt-attaaatttcaatgagcataccgaataagctaccatgagaagtctgatattgtaaccaagcttccattgggtcaaat |
37801949 |
T |
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| Q |
114 |
ctctgtccacacaaatagcaaaaacgatagcttgaattgctcccattgtcgacatcaaagctgtgcttgagtg |
186 |
Q |
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| T |
37801948 |
ctctgtccacacaaatagcaaaaacgatggcttgaattgctcccattgtcgacatcaaagcagtgcttgagtg |
37801876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 48 - 186
Target Start/End: Complemental strand, 37792322 - 37792184
Alignment:
| Q |
48 |
atgagcataccgaataagctaccatgagaagtctgatattgtaaccaagcttccattgggtcaaatctctgtccacacaaatagcaaaaacgatagcttg |
147 |
Q |
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| T |
37792322 |
atgagcataccgaataagctaccatgagaagtctgatattgtaaccaagcttccattgggtcaaatctctgtccacacaaatagcaaaaacgatggcttg |
37792223 |
T |
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| Q |
148 |
aattgctcccattgtcgacatcaaagctgtgcttgagtg |
186 |
Q |
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| T |
37792222 |
aattgctcccattgtcgacatcaaagcagtgcttgagtg |
37792184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 50 - 161
Target Start/End: Complemental strand, 37808347 - 37808236
Alignment:
| Q |
50 |
gagcataccgaataagctaccatgagaagtctgatattgtaaccaagcttccattgggtcaaatctctgtccacacaaatagcaaaaacgatagcttgaa |
149 |
Q |
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| T |
37808347 |
gagcataccgaataagccatagtgagaagcctgatatcgtaacccagcttccattcggtccaatccctatcgacacaaagagcaacaacaatggcttgaa |
37808248 |
T |
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| Q |
150 |
ttgctcccattg |
161 |
Q |
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| T |
37808247 |
ctgctcccattg |
37808236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 162
Target Start/End: Complemental strand, 37782970 - 37782858
Alignment:
| Q |
50 |
gagcataccgaataagctaccatgagaagtctgatattgtaaccaagcttccattgggtcaaatctctgtccacacaaatagcaaaaacgatagcttgaa |
149 |
Q |
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| T |
37782970 |
gagcataccgaataagcaatagtaagaagtctgatatcgtaaccgagcttccattgattccaatctctatcgatacaaagagcaaaaacaatggcttgaa |
37782871 |
T |
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| Q |
150 |
ttgctcccattgt |
162 |
Q |
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| T |
37782870 |
tcgctgccattgt |
37782858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 185
Target Start/End: Original strand, 1214195 - 1214300
Alignment:
| Q |
80 |
ctgatattgtaaccaagcttccattgggtcaaatctctgtccacacaaatagcaaaaacgatagcttgaattgctcccattgtcgacatcaaagctgtgc |
179 |
Q |
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|||||||| |||| | |||||||||| || ||||||| || ||||||| | ||||| | | ||||| |||||||||||||| ||||| |||||||| | |
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| T |
1214195 |
ctgatattccaacccaacttccattggctccaatctctttcaacacaaagaccaaaagcagtggcttgtattgctcccattgtagacattaaagctgtac |
1214294 |
T |
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| Q |
180 |
ttgagt |
185 |
Q |
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|||||| |
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| T |
1214295 |
ttgagt |
1214300 |
T |
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