View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1120_low_15 (Length: 251)
Name: NF1120_low_15
Description: NF1120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1120_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 47 - 244
Target Start/End: Complemental strand, 23507371 - 23507174
Alignment:
| Q |
47 |
cccttttatatatacaacactatgttgactctcttaacagcaactccatcttcaattcccactttccctttctaaacctttttccattctctccaacaca |
146 |
Q |
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| T |
23507371 |
cccttttatatatacaacactatgttgactctcttaacagcaactccatcttcaattcccactttccctttctaaacctttttccattctctccaacaca |
23507272 |
T |
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| Q |
147 |
tacatatatatgtttacaactaacaactctatctactcacacccttcctcttcctccctctcacatatcattgacgaattcagagggctttcatatca |
244 |
Q |
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| T |
23507271 |
tacatatatatgtttacaactaacaactctatctactcacacccttcctcttcctccctctcacatatcattgacgaattcagagggctttcatatca |
23507174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 23247904 - 23247850
Alignment:
| Q |
99 |
caattcccactttccctttctaaacctttttccattctctccaacacatacatat |
153 |
Q |
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| T |
23247904 |
caattcccactttacctctcaaaaccattttccactctatccaacacatacatat |
23247850 |
T |
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