View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1120_low_3 (Length: 506)
Name: NF1120_low_3
Description: NF1120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1120_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 4 - 477
Target Start/End: Complemental strand, 35805914 - 35805441
Alignment:
| Q |
4 |
accaccaccatcaaaattgtgataaatataaatctccaccacgcaattgcatatgaatttattaatgtaaattaagaggctagtttgtaaattaagaggc |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35805914 |
accaccaccatcaaaattgtgataaatataaatctccaccacgcaattgcatatgaatttattaatgtaaattaagaggctagtttgtaaattaagaggc |
35805815 |
T |
|
| Q |
104 |
tagttagaattgaagttaaacaacaccacttgctggccttgtccacaacatgaagaccactcaaggtagccatgagggttgctttcaaatgtctcatgag |
203 |
Q |
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| T |
35805814 |
tagttagaattgaagtgaaacaacaccacttgttggccttgtccacaacatgaagaccactcaaggtagccatgagggttgctttcaaatgtctcatgag |
35805715 |
T |
|
| Q |
204 |
atatatgtactattcaccaccaccggtgcttacataattcccccaccactgccaccgtggacccttggcttccaccctcaatttcatcatttagggtttt |
303 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35805714 |
atatatgtacgattcaccaccaccggtgcttacataattcccccaccactgccaccgtggacccttggcttccaccctcaatttcatcatttagggtttt |
35805615 |
T |
|
| Q |
304 |
gatctaactatctgcaaagggaatcgatccatattagtattatgatagaattgacaaagttatttgatgtaacttaatgaatgatttggagaaaattgaa |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35805614 |
gatctaactatctgcaaagggaatcgatccatattagtattatgatagaattgacaaagttatttgatgtaacttaatgaatgatttggagaaaattgaa |
35805515 |
T |
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| Q |
404 |
acaatattcgggtgtagtgcaaggaaaaacaaaagagaagcttaaaattaatatgatataatgcatgtttgagg |
477 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35805514 |
acaatattcgggtgtagtgcaaggaaaaacaaaagagaagctaaaaattaatatgatataatgcatgtttgagg |
35805441 |
T |
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