View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1120_low_4 (Length: 485)
Name: NF1120_low_4
Description: NF1120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1120_low_4 |
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| [»] scaffold0208 (1 HSPs) |
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| [»] scaffold0581 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 68 - 366
Target Start/End: Original strand, 35632027 - 35632325
Alignment:
| Q |
68 |
agtgaatagaaaaacatccaaccaatagagttaacagatctcaatggctgaaataagttagaacagtttacattctaaatttaaatttatattgagtgcc |
167 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||| |
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| T |
35632027 |
agtgaatagaaaaacatccaaccaatagagttaacagatctcaatggctgaaataagttagaacagtttacattctaaattgaaatttatatcgaatgcc |
35632126 |
T |
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| Q |
168 |
gtttcggtgaaacccgaagtttaacattctcccaacggctctgagcctgagaactctgacccaaacatctctgagtctgtgaaccctcggccacaggggt |
267 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
35632127 |
gtttcggtgaaacccgcagtttaacattctcctaacggctctgagcctgagaactctgacccaaacgtctctgagtctgtgaaccctcgaccacaggggt |
35632226 |
T |
|
| Q |
268 |
ttgagtgttctgagacagaagagtctgagggccctgagcctgagagctagatgcattcaatgaacctaatttaaaccgctttttgatatgatccttcag |
366 |
Q |
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|||||||||||||| |||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35632227 |
ttgagtgttctgagccagaggagtccgagggccctgaatctgagagctagatgcatgcaatgaacctaatttaaaccgctttttgatacaatccttcag |
35632325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 35635353 - 35635418
Alignment:
| Q |
68 |
agtgaatagaaaaacatccaaccaatagagttaacagatctcaatggctgaaataagttagaacag |
133 |
Q |
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|||||| |||||||||| |||||||||||||||||| |||||||||| |||| |||||| ||||| |
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| T |
35635353 |
agtgaaaagaaaaacattcaaccaatagagttaacaaatctcaatggttgaaggaagttataacag |
35635418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 10571676 - 10571739
Alignment:
| Q |
70 |
tgaatagaaaaacatccaaccaatagagttaacagatctcaatggctgaaataagttagaacag |
133 |
Q |
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|||| |||||||||| |||||||||||||||||| |||||||||| |||| |||||| ||||| |
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| T |
10571676 |
tgaaaagaaaaacattcaaccaatagagttaacaaatctcaatggttgaaggaagttataacag |
10571739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 365 - 478
Target Start/End: Original strand, 35805814 - 35805927
Alignment:
| Q |
365 |
agcctcttaatttacaaactagcctcttaatttacattaataaattcatatgcaattgcgtggtggagatttatatttatcacaattttgatggtggtgg |
464 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35805814 |
agcctcttaatttacaaactagcctcttaatttacattaataaattcatatgcaattgcgtggtggagatttatatttatcacaattttgatggtggtgg |
35805913 |
T |
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| Q |
465 |
tgtgattttgttgg |
478 |
Q |
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| |||||||||||| |
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| T |
35805914 |
tatgattttgttgg |
35805927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 15335 - 15270
Alignment:
| Q |
68 |
agtgaatagaaaaacatccaaccaatagagttaacagatctcaatggctgaaataagttagaacag |
133 |
Q |
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|||||| |||||||||| |||||||||||||||||| |||||||||| |||| |||||| ||||| |
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| T |
15335 |
agtgaaaagaaaaacattcaaccaatagagttaacaaatctcaatggttgaaggaagttataacag |
15270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0581 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0581
Description:
Target: scaffold0581; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 2651 - 2696
Alignment:
| Q |
68 |
agtgaatagaaaaacatccaaccaatagagttaacagatctcaatg |
113 |
Q |
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|||||| || ||||||| |||||||||||||||||| ||||||||| |
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| T |
2651 |
agtgaaaagtaaaacattcaaccaatagagttaacaaatctcaatg |
2696 |
T |
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