View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1120_low_6 (Length: 432)
Name: NF1120_low_6
Description: NF1120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1120_low_6 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 44 - 432
Target Start/End: Original strand, 13749338 - 13749726
Alignment:
| Q |
44 |
tatcatcataatccacataattgcttccctaggtcacagaacacgccaaaatcaaatctcatgcccaaatctaacgttatcatcaaatgagnnnnnnnnn |
143 |
Q |
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| T |
13749338 |
tatcatcataatccacataattgcttccctaggtcacagaacacgccaaaatcaaatctcatgcccaaatctaacattatcatcaaatgagtttttgaaa |
13749437 |
T |
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| Q |
144 |
nnnnnnagaaatccaacaaaaatttagatacttgagctgtgtcatctccaaaggcaatttacagtttaaaaaattagatatttgtcatacacataattct |
243 |
Q |
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| T |
13749438 |
ttttttagaaatccaagaaaattttagatacttgagctttgtcatctccaaaggcaatttacggtttagaaaattagatatttgtcatacacataattct |
13749537 |
T |
|
| Q |
244 |
ttaaatccataagttttcaatagattaagaacacccaacaaaccagaagttttcaattcaagatccctggaagttttcttatgatgtctaggaacagttt |
343 |
Q |
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| T |
13749538 |
ttaaatccataagttttcaatagattaagaacacccaacaaaccagaagttttcaattcaagatccctggaagttttcttatgatgtctaggaacagttt |
13749637 |
T |
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| Q |
344 |
taacaatcaaagtaacaaaaccatcaacaaaggcatcgaacaacattatcacctctcacctatgcatgatcttctgatttcttcttcac |
432 |
Q |
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| T |
13749638 |
taacaatcaaagtaacaaaaccatcaacaaaggcatcgaacaacattatcacctctcacctatacatgatcttctgatttcatcttcac |
13749726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 13598938 - 13598901
Alignment:
| Q |
44 |
tatcatcataatccacataattgcttccctaggtcaca |
81 |
Q |
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| T |
13598938 |
tatcatcataatccacataattgcttccctaagtcaca |
13598901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 43114185 - 43114222
Alignment:
| Q |
44 |
tatcatcataatccacataattgcttccctaggtcaca |
81 |
Q |
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| T |
43114185 |
tatcatcataatccacataattgcttccctagatcaca |
43114222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 207 - 418
Target Start/End: Original strand, 56234014 - 56234229
Alignment:
| Q |
207 |
gtttaaaaaattagatatttgtcatacacataattctttaaatccataagttttcaatagattaagaacacccaacaaaccagaagttttcaattcaaga |
306 |
Q |
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| T |
56234014 |
gtttagaaaattaaatatatgtcatacacataattctttaaatccataagttttcaatagattatgaacatcaaataaaccagaagttctcaattcaaga |
56234113 |
T |
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| Q |
307 |
tccctggaagttttcttatgatgtctaggaac----agttttaacaatcaaagtaacaaaaccatcaacaaaggcatcgaacaacattatcacctctcac |
402 |
Q |
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|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||| ||| || |||| ||||||||||| ||| |
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| T |
56234114 |
tcactggaagttttcttatgatgtctaggaacagttagttttaacaatcaaagtaacaaaacgagcaacaaaagcagcggacaatattatcacctcccac |
56234213 |
T |
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| Q |
403 |
ctatgcatgatcttct |
418 |
Q |
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|| ||||||||||| |
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| T |
56234214 |
ttacacatgatcttct |
56234229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 10570053 - 10570109
Alignment:
| Q |
318 |
tttcttatgatgtctaggaacagttttaacaatcaaagtaacaaaaccatcaacaaa |
374 |
Q |
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| T |
10570053 |
tttcttatgatgtctaggaacagttttaacaatcaaagtaacaaaaccagcaacaaa |
10570109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 37610389 - 37610340
Alignment:
| Q |
83 |
aacacgccaaaatcaaatctcatgcccaaatctaacgttatcatcaaatg |
132 |
Q |
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||||| ||||||||||||||||| |||||||| ||| ||||||||||||| |
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| T |
37610389 |
aacacaccaaaatcaaatctcatacccaaatccaacattatcatcaaatg |
37610340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 37610441 - 37610404
Alignment:
| Q |
44 |
tatcatcataatccacataattgcttccctaggtcaca |
81 |
Q |
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| T |
37610441 |
tatcatcataatccacataattgcttccctaagtcaca |
37610404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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