View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11210_high_1 (Length: 396)
Name: NF11210_high_1
Description: NF11210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11210_high_1 |
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| [»] scaffold0191 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 37570871 - 37570496
Alignment:
| Q |
1 |
attggaaattcgaggctttttaaaggaagaaacagttgcatgtaatcctattctccttttcccactagcaggctgcttatgatttgtatgaactgtctta |
100 |
Q |
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| T |
37570871 |
attggaaattcgaggctttttaaaggaagaaacagttgcatgtaatcctattctccttttcccactagcaggctgcttatgatttgtatgaactgtctta |
37570772 |
T |
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| Q |
101 |
atggtattggaaatatccaccaatgccctgcccaatggtttttcacgtgaatccattcttgacgaaaaaccattcaatgaagagctttttattgtcgtgt |
200 |
Q |
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| T |
37570771 |
atggtattggaaatatccaccaatgccctgcccaatggtttttcacgtgaatccattcttgacgaaaaaccattcaatgaagagctttttattgtcgtgt |
37570672 |
T |
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| Q |
201 |
cagccacttcattcttgttatacaaaggtttctgtccaggagttatgctacttttacagccacagtcactttcattcacaacatcatcgaacttcacgat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37570671 |
cagccacttcattcttgttatacaaaggtttctgtccaggagttatgctacttttacagccacagtcactttcattcacaacatcatcgaacttcacgat |
37570572 |
T |
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| Q |
301 |
taagttattcccattaccttcgttgtgaagcttatttgaaaattccatttgttttgaaggctgcaaagggtatgtg |
376 |
Q |
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| T |
37570571 |
taagttattcccattaccttcgttgcgaagcttatttgaaaattccatttgttttgaaggctgcaaagggtatgtg |
37570496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 246 - 376
Target Start/End: Original strand, 29523 - 29656
Alignment:
| Q |
246 |
tgctacttttacagccacagtcactttcattcacaacatcatcgaacttcacgattaagttattcccattaccttcgttgtgaag---cttatttgaaaa |
342 |
Q |
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| T |
29523 |
tgctacttttacagccataatcactttcattcgcaacatcatcaaatttcatgattaaattattcccattaccttcatggccaagcaacttatttgaaaa |
29622 |
T |
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| Q |
343 |
ttccatttgttttgaaggctgcaaagggtatgtg |
376 |
Q |
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| T |
29623 |
ttctgtttgtttggaaggctgcaaagggtatgtg |
29656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 29348 - 29418
Alignment:
| Q |
2 |
ttggaaattcgaggctttttaaaggaagaaacagttgcatgtaatcctattctccttttcccactagcagg |
72 |
Q |
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| T |
29348 |
ttggaaatgcgaggctttttgaaagaagaaacatttgcagttaatcctagtctccttttcccaatagcagg |
29418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 10432952 - 10432890
Alignment:
| Q |
2 |
ttggaaattcgaggctttttaaaggaagaaacagttgcatgtaatcctattctccttttccca |
64 |
Q |
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| T |
10432952 |
ttggaaatgcgaggctttttgaaggaagaaacatttgcagttaatcctagtctccttttccca |
10432890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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