View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11210_high_2 (Length: 392)
Name: NF11210_high_2
Description: NF11210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11210_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 379
Target Start/End: Original strand, 34681607 - 34681977
Alignment:
| Q |
17 |
agttgcaggaggtaaaaccgtctgtgagaggttgggagtgatattggtctccattatctcttccatttggaatgctaggaatgcaaaggtatttaaacag |
116 |
Q |
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| T |
34681607 |
agttgcaggaggtaaaaccgtttgtgagaggttgggagtgatattggtctccattatctcttccatttggaatgctaggaatgcaaaggtatttaaacag |
34681706 |
T |
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| Q |
117 |
gctgctattaaatgggaaaaggtagcagatgaatataaagttctatcttgaagaattattcgatcaagatcgacaagttttgtttttggatctgcgctct |
216 |
Q |
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| T |
34681707 |
gctgctattaaatgggaaaagggagcagatgaatataaagttctatcttgaagaattattcaatcaagatcgacaagttttgtttttggatctgcgctct |
34681806 |
T |
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| Q |
217 |
tctgtttctgtggagcatccgtgttggttctgttttggtgtctat--------cgcagggactttctatagtaggagctcgagtttcaacaaattcggtg |
308 |
Q |
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| T |
34681807 |
tctgtttctgtggagcattcgtgttggttctgttttggtgtctatttgatggccgcagggactttctatcgtgggagctcgagtttcaacaaattcggtg |
34681906 |
T |
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| Q |
309 |
catacatacatcagctatcacaagaagttaggaactattttcacaaatttgcatcatccgttctagtccct |
379 |
Q |
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| T |
34681907 |
catacatacatcagctatcacaagaagttaggaactattttcacaaatttgtgtcatccgttctagtccct |
34681977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 10831285 - 10831464
Alignment:
| Q |
18 |
gttgcaggaggtaaaaccgtctgtgagaggttgggagtgatattggtctccattatctcttccatttggaatgctaggaatgcaaaggtatttaaacagg |
117 |
Q |
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| T |
10831285 |
gttgctggaggtaaaaacgttcttgagaggctgggtgtaatctaggtctcaattatctcttccatctggaatgctaggaacgcaatggtcttttaacaga |
10831384 |
T |
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| Q |
118 |
ctgctattaaatgggaaaaggtagcagatgaatataaagttctatcttgaagaattattcgatcaagatcgacaagtttt |
197 |
Q |
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| T |
10831385 |
ctggtattaattgggaaaaggttgcgggtgaatataaagttctatcttggagagttattcgattaagatctacaggtttt |
10831464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 89 - 197
Target Start/End: Original strand, 12201604 - 12201712
Alignment:
| Q |
89 |
tgctaggaatgcaaaggtatttaaacaggctgctattaaatgggaaaaggtagcagatgaatataaagttctatcttgaagaattattcgatcaagatcg |
188 |
Q |
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| T |
12201604 |
tgctaggaacacaatggtttttacacaggctgatattgattgggagagggttgcagatgaatataaagttctatcttggagaatcattcgataaagattg |
12201703 |
T |
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| Q |
189 |
acaagtttt |
197 |
Q |
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| T |
12201704 |
acaggtttt |
12201712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 197
Target Start/End: Original strand, 40754734 - 40754862
Alignment:
| Q |
69 |
attatctcttccatttggaatgctaggaatgcaaaggtatttaaacaggctgctattaaatgggaaaaggtagcagatgaatataaagttctatcttgaa |
168 |
Q |
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| T |
40754734 |
attatatcgtccatttggaatgcttggaacgcaatggtttttacaaaggctgatattgattgggagagggatgcagatgaatataaagttatatcttgga |
40754833 |
T |
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| Q |
169 |
gaattattcgatcaagatcgacaagtttt |
197 |
Q |
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| T |
40754834 |
gaatcattcaatcaagaccgacaggtttt |
40754862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 10831560 - 10831628
Alignment:
| Q |
192 |
agttttgtttttggatctgcgctcttctgtttctgtggagcatccgtgttggttctgttttggtgtctat |
261 |
Q |
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| T |
10831560 |
agttttgtttttggtgctgcactcttctctt-ctgtggaacatccatgttggttctgttttggagtctat |
10831628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 34276096 - 34276172
Alignment:
| Q |
19 |
ttgcaggaggtaaaaccgtctgtgagaggttgggagtgatattggtctccattatctcttccatttggaatgctagg |
95 |
Q |
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| T |
34276096 |
ttgcaagaggtaaaaatgtttgggagaggttgggtgtgatctgggtctcaattatatattccatttggaaagctagg |
34276172 |
T |
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