View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11210_high_3 (Length: 324)
Name: NF11210_high_3
Description: NF11210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11210_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 44787288 - 44786984
Alignment:
| Q |
1 |
gaattagcaccaacggtagacaatgaattgcctcaggagtttttgggacatctagtcgtacgtggcttacgccttgatctcattgagcctggccgtatcg |
100 |
Q |
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| T |
44787288 |
gaatcagcaccaacggtagacaatgaattgcctcaggagtttttgggacatctagtcgtacgtggcttacgccttgatctcattgagcctggccgtatcg |
44787189 |
T |
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| Q |
101 |
ttttctcaatgaagatacctcccaatttacttgttcgtatcttactcttttcatctttttatctttccctaataaataacattaatggattttgttcttt |
200 |
Q |
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| T |
44787188 |
ttttctcaatgaagatacctcccaatttacttgttcgtatcttactcttttcatctttttatctttccataataaataacattaatggattttgttcttt |
44787089 |
T |
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| Q |
201 |
ttcatttatttgcagaattctagtaactgcttacacggtggtgccatcactactttggtggatctggtaggcgcgaccgcagttcccaccgcgggatttt |
300 |
Q |
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| T |
44787088 |
ttcatttatttgcagaattctagtaactgcttacacggtggtgccatcactactttggtggatctggtaggcgcaactgcagttcccaccgcgggatttt |
44786989 |
T |
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| Q |
301 |
catgg |
305 |
Q |
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||||| |
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| T |
44786988 |
catgg |
44786984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 155
Target Start/End: Complemental strand, 44793091 - 44792951
Alignment:
| Q |
15 |
ggtagacaatgaattgcctcaggagtttttgggacatctagtcgtacgtggcttacgccttgatctcattgagcctggccgtatcgttttctcaatgaag |
114 |
Q |
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| T |
44793091 |
ggtagacgatgaattgcctcaggagtttctggaacatctaaccttgcgcggcctacgattggatcgcattgaacctggtcgtgtcgtcttctcaatgaac |
44792992 |
T |
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| Q |
115 |
atacctcccaatttacttgttcgtatcttactcttttcatc |
155 |
Q |
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| T |
44792991 |
atacctccacgtttactcgttcgtatcctacactattcatc |
44792951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 44801313 - 44801250
Alignment:
| Q |
76 |
gatctcattgagcctggccgtatcgttttctcaatgaagatacctcccaatttacttgttcgta |
139 |
Q |
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| T |
44801313 |
gatctcattgagcctggccatgtcgttttctcaatgaacatacctccacgtttactcgttcgta |
44801250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 299
Target Start/End: Complemental strand, 44789315 - 44789250
Alignment:
| Q |
234 |
cacggtggtgccatcactactttggtggatctggtaggcgcgaccgcagttcccaccgcgggattt |
299 |
Q |
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| T |
44789315 |
cacggtggtgccatcactactttggtggatgtgataggcgcagctgcaattcccgccgctggattt |
44789250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 119
Target Start/End: Complemental strand, 44805843 - 44805762
Alignment:
| Q |
38 |
agtttttgggacatctagtcgtacgtggcttacgccttgatctcattgagcctggccgtatcgttttctcaatgaagatacc |
119 |
Q |
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| T |
44805843 |
agtttctggaacatctaatcttgcgtggcctacgcttcgatgtcattgagcctggccgtgtcattttcacaatgaacatacc |
44805762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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