View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11211_high_10 (Length: 317)

Name: NF11211_high_10
Description: NF11211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11211_high_10
NF11211_high_10
[»] chr4 (12 HSPs)
chr4 (212-302)||(2602588-2602680)
chr4 (14-95)||(2602288-2602364)
chr4 (164-203)||(22529604-22529643)
chr4 (160-203)||(32807110-32807153)
chr4 (164-203)||(48148895-48148934)
chr4 (164-210)||(35804315-35804361)
chr4 (162-203)||(2717192-2717233)
chr4 (170-203)||(4463423-4463456)
chr4 (166-210)||(10062604-10062648)
chr4 (158-210)||(23719207-23719259)
chr4 (162-210)||(32508053-32508101)
chr4 (162-210)||(49876785-49876833)
[»] chr8 (6 HSPs)
chr8 (162-210)||(36128980-36129028)
chr8 (166-203)||(32379285-32379322)
chr8 (166-203)||(32433240-32433277)
chr8 (162-203)||(36683276-36683317)
chr8 (162-203)||(37438638-37438679)
chr8 (162-210)||(3530540-3530588)
[»] chr7 (8 HSPs)
chr7 (158-210)||(45465529-45465581)
chr7 (158-203)||(19837515-19837560)
chr7 (162-203)||(25513522-25513563)
chr7 (162-203)||(41492495-41492536)
chr7 (158-203)||(42681500-42681545)
chr7 (162-210)||(31521231-31521279)
chr7 (162-210)||(38730375-38730423)
chr7 (162-210)||(45705838-45705886)
[»] chr3 (9 HSPs)
chr3 (158-206)||(35119356-35119404)
chr3 (158-210)||(41309557-41309609)
chr3 (158-210)||(54767711-54767763)
chr3 (158-203)||(11899788-11899833)
chr3 (162-203)||(29359110-29359151)
chr3 (162-203)||(34784611-34784652)
chr3 (162-203)||(34784987-34785028)
chr3 (158-210)||(41752646-41752698)
chr3 (163-203)||(45647714-45647754)
[»] chr2 (6 HSPs)
chr2 (158-210)||(25903466-25903518)
chr2 (158-210)||(36862575-36862627)
chr2 (158-210)||(38556137-38556189)
chr2 (163-210)||(14370036-14370083)
chr2 (158-203)||(31765055-31765100)
chr2 (163-203)||(7958547-7958587)
[»] chr1 (6 HSPs)
chr1 (158-210)||(40167215-40167267)
chr1 (163-210)||(30925587-30925634)
chr1 (164-203)||(42418858-42418897)
chr1 (158-203)||(40393421-40393466)
chr1 (158-210)||(16516355-16516407)
chr1 (162-198)||(28215839-28215875)
[»] scaffold0001 (1 HSPs)
scaffold0001 (162-203)||(180509-180550)
[»] chr6 (2 HSPs)
chr6 (166-203)||(24797044-24797081)
chr6 (163-203)||(4062532-4062572)
[»] chr5 (2 HSPs)
chr5 (158-203)||(30187884-30187929)
chr5 (162-210)||(7730717-7730765)


Alignment Details
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 212 - 302
Target Start/End: Original strand, 2602588 - 2602680
Alignment:
Q  212 aatatatacagggatcatttact--attaaccatttattttataatgttttccatttctagacttttcttttgctcgcatatggcttgttttt 302  Q
    ||||| |||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2602588 aatatttacatggatcatttacttaattaaccatttattttataatgttttccatttctagacttttcttttggtcgcatatggcttgttttt 2602680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 2602288 - 2602364
Alignment:
Q  14 agaggagtggttaatgtctgtctaataggaaatggtcatatatacataccaaagggcgatacagtcaatataaatcatcttg 95  Q
    ||||||||||||||||||    |||||||||||||||||| |||||||| ||| |||||||||||| |||||||||||||||    
T  2602288 agaggagtggttaatgtc----taataggaaatggtcatacatacatacgaaa-ggcgatacagtcgatataaatcatcttg 2602364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 22529604 - 22529643
Alignment:
Q  164 tgtgacatttatcttaagcattttagagacaaaaaatgtt 203  Q
    |||||||||| ||||||||||||||||||| |||||||||    
T  22529604 tgtgacatttttcttaagcattttagagaccaaaaatgtt 22529643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 32807153 - 32807110
Alignment:
Q  160 ttcctgtgacatttatcttaagcattttagagacaaaaaatgtt 203  Q
    |||||||||||||| ||||||||||||||| ||| |||||||||    
T  32807153 ttcctgtgacatttttcttaagcattttagggaccaaaaatgtt 32807110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 48148934 - 48148895
Alignment:
Q  164 tgtgacatttatcttaagcattttagagacaaaaaatgtt 203  Q
    |||||||||| ||||||||||||||| |||||||||||||    
T  48148934 tgtgacatttttcttaagcattttagggacaaaaaatgtt 48148895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 35804361 - 35804315
Alignment:
Q  164 tgtgacatttatcttaagcattttagagacaaaaaatgttaatgaaa 210  Q
    |||||||||| ||||||||||||||| || |||||||||| ||||||    
T  35804361 tgtgacatttttcttaagcattttagggataaaaaatgttgatgaaa 35804315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 2717192 - 2717233
Alignment:
Q  162 cctgtgacatttatcttaagcattttagagacaaaaaatgtt 203  Q
    |||||||||||| |||||||||||||||| || |||||||||    
T  2717192 cctgtgacatttttcttaagcattttagaaaccaaaaatgtt 2717233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 4463456 - 4463423
Alignment:
Q  170 atttatcttaagcattttagagacaaaaaatgtt 203  Q
    |||| |||||||||||||||||||||||||||||    
T  4463456 atttttcttaagcattttagagacaaaaaatgtt 4463423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 10062604 - 10062648
Alignment:
Q  166 tgacatttatcttaagcattttagagacaaaaaatgttaatgaaa 210  Q
    |||||||| ||||||||||||||| || |||||||||| ||||||    
T  10062604 tgacatttttcttaagcattttagggataaaaaatgttgatgaaa 10062648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 23719207 - 23719259
Alignment:
Q  158 agttcctgtgacatttatcttaagcattttagagacaaaaaatgttaatgaaa 210  Q
    ||||||||||||||||  ||||||||||||||  | |||||||||| ||||||    
T  23719207 agttcctgtgacattttccttaagcattttaggaataaaaaatgttgatgaaa 23719259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 32508101 - 32508053
Alignment:
Q  162 cctgtgacatttatcttaagcattttagagacaaaaaatgttaatgaaa 210  Q
    ||||||||||||  |||||||||||||| ||| ||||||||| ||||||    
T  32508101 cctgtgacattttccttaagcattttagggactaaaaatgttgatgaaa 32508053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 49876785 - 49876833
Alignment:
Q  162 cctgtgacatttatcttaagcattttagagacaaaaaatgttaatgaaa 210  Q
    ||||| |||||| ||||||||||||||| ||| ||||| ||||||||||    
T  49876785 cctgtaacatttttcttaagcattttagggactaaaaaagttaatgaaa 49876833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 36129028 - 36128980
Alignment:
Q  162 cctgtgacatttatcttaagcattttagagacaaaaaatgttaatgaaa 210  Q
    ||||||||||||  |||||||||||||| ||||||||||||| ||||||    
T  36129028 cctgtgacattttccttaagcattttagggacaaaaaatgttgatgaaa 36128980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 32379285 - 32379322
Alignment:
Q  166 tgacatttatcttaagcattttagagacaaaaaatgtt 203  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  32379285 tgacatttttcttaagcattttagagaccaaaaatgtt 32379322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 32433240 - 32433277
Alignment:
Q  166 tgacatttatcttaagcattttagagacaaaaaatgtt 203  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  32433240 tgacatttttcttaagcattttagagaccaaaaatgtt 32433277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 36683317 - 36683276
Alignment:
Q  162 cctgtgacatttatcttaagcattttagagacaaaaaatgtt 203  Q
    |||||||||||| ||||||||||||||| || ||||||||||    
T  36683317 cctgtgacatttttcttaagcattttagggataaaaaatgtt 36683276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 37438679 - 37438638
Alignment:
Q  162 cctgtgacatttatcttaagcattttagagacaaaaaatgtt 203  Q
    |||||||||||| ||||||||||||||| || ||||||||||    
T  37438679 cctgtgacatttttcttaagcattttagggataaaaaatgtt 37438638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 3530540 - 3530588
Alignment:
Q  162 cctgtgacatttatcttaagcattttagagacaaaaaatgttaatgaaa 210  Q
    ||||||||||||  |||||||||||||| ||| ||||||||| ||||||    
T  3530540 cctgtgacattttccttaagcattttagggaccaaaaatgttgatgaaa 3530588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 45465529 - 45465581
Alignment:
Q  158 agttcctgtgacatttatcttaagcattttagagacaaaaaatgttaatgaaa 210  Q
    ||||||||||||||||  |||||||||||||| ||| ||||||||| ||||||    
T  45465529 agttcctgtgacattttccttaagcattttagggaccaaaaatgttgatgaaa 45465581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 19837515 - 19837560
Alignment:
Q  158 agttcctgtgacatttatcttaagcattttagagacaaaaaatgtt 203  Q
    |||| ||||||||||| ||||||||||||||| ||| |||||||||    
T  19837515 agtttctgtgacatttttcttaagcattttagggaccaaaaatgtt 19837560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 25513563 - 25513522
Alignment:
Q  162 cctgtgacatttatcttaagcattttagagacaaaaaatgtt 203  Q
    ||||||||||||  |||||||||||||| |||||||||||||    
T  25513563 cctgtgacattttccttaagcattttagggacaaaaaatgtt 25513522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 41492536 - 41492495
Alignment:
Q  162 cctgtgacatttatcttaagcattttagagacaaaaaatgtt 203  Q
    |||||||||||| ||||||||||||||| ||| |||||||||    
T  41492536 cctgtgacatttttcttaagcattttagggaccaaaaatgtt 41492495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 42681500 - 42681545
Alignment:
Q  158 agttcctgtgacatttatcttaagcattttagagacaaaaaatgtt 203  Q
    ||||||||||||||||  |||||||||||||| ||| |||||||||    
T  42681500 agttcctgtgacattttccttaagcattttagggaccaaaaatgtt 42681545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 31521231 - 31521279
Alignment:
Q  162 cctgtgacatttatcttaagcattttagagacaaaaaatgttaatgaaa 210  Q
    ||||||| |||| ||||||||||||||| ||| ||||||||| ||||||    
T  31521231 cctgtgatatttttcttaagcattttagggaccaaaaatgttgatgaaa 31521279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 38730423 - 38730375
Alignment:
Q  162 cctgtgacatttatcttaagcattttagagacaaaaaatgttaatgaaa 210  Q
    ||||||||||||  |||||||||||||| ||| ||||||||| ||||||    
T  38730423 cctgtgacattttccttaagcattttagggaccaaaaatgttgatgaaa 38730375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 45705886 - 45705838
Alignment:
Q  162 cctgtgacatttatcttaagcattttagagacaaaaaatgttaatgaaa 210  Q
    ||||||||||||  |||||||||||||| ||| ||||||||| ||||||    
T  45705886 cctgtgacattttccttaagcattttagggacgaaaaatgttgatgaaa 45705838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 35119356 - 35119404
Alignment:
Q  158 agttcctgtgacatttatcttaagcattttagagacaaaaaatgttaat 206  Q
    ||||||||||||||||  |||||||||||||| ||| ||||||||||||    
T  35119356 agttcctgtgacattttccttaagcattttagggactaaaaatgttaat 35119404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 41309609 - 41309557
Alignment:
Q  158 agttcctgtgacatttatcttaagcattttagagacaaaaaatgttaatgaaa 210  Q
    |||||||||||||||| | ||| |||||||| |||||||||||||| ||||||    
T  41309609 agttcctgtgacattttttttacgcattttatagacaaaaaatgttgatgaaa 41309557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 54767711 - 54767763
Alignment:
Q  158 agttcctgtgacatttatcttaagcattttagagacaaaaaatgttaatgaaa 210  Q
    ||||||||||||||||  |||||||||||||| ||| ||||||||| ||||||    
T  54767711 agttcctgtgacattttccttaagcattttagggaccaaaaatgttgatgaaa 54767763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 11899788 - 11899833
Alignment:
Q  158 agttcctgtgacatttatcttaagcattttagagacaaaaaatgtt 203  Q
    ||||| |||||||||| ||||||||||||||| ||| |||||||||    
T  11899788 agttcttgtgacatttttcttaagcattttagggaccaaaaatgtt 11899833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 29359110 - 29359151
Alignment:
Q  162 cctgtgacatttatcttaagcattttagagacaaaaaatgtt 203  Q
    |||||||||||| ||||||||||||||| ||| |||||||||    
T  29359110 cctgtgacatttttcttaagcattttagggactaaaaatgtt 29359151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 34784611 - 34784652
Alignment:
Q  162 cctgtgacatttatcttaagcattttagagacaaaaaatgtt 203  Q
    ||||||||||||| |||||||||||||| ||| |||||||||    
T  34784611 cctgtgacatttaccttaagcattttagggactaaaaatgtt 34784652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 34784987 - 34785028
Alignment:
Q  162 cctgtgacatttatcttaagcattttagagacaaaaaatgtt 203  Q
    ||||||||||||| |||||||||||||| ||| |||||||||    
T  34784987 cctgtgacatttaccttaagcattttagggactaaaaatgtt 34785028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 41752698 - 41752646
Alignment:
Q  158 agttcctgtgacatttatcttaagcattttagagacaaaaaatgttaatgaaa 210  Q
    ||||||| ||||||||  |||||||||||||| ||| ||||||||| ||||||    
T  41752698 agttcctctgacattttccttaagcattttagggaccaaaaatgttgatgaaa 41752646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 45647754 - 45647714
Alignment:
Q  163 ctgtgacatttatcttaagcattttagagacaaaaaatgtt 203  Q
    ||||||||||| ||||||||||||||| ||| |||||||||    
T  45647754 ctgtgacatttttcttaagcattttagtgactaaaaatgtt 45647714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 25903466 - 25903518
Alignment:
Q  158 agttcctgtgacatttatcttaagcattttagagacaaaaaatgttaatgaaa 210  Q
    |||||||||||||||| ||||||| ||||||| ||| ||||||||| ||||||    
T  25903466 agttcctgtgacatttttcttaagtattttagggactaaaaatgttgatgaaa 25903518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 36862575 - 36862627
Alignment:
Q  158 agttcctgtgacatttatcttaagcattttagagacaaaaaatgttaatgaaa 210  Q
    ||||||||||||||||  |||||||||||||| ||| ||||||||| ||||||    
T  36862575 agttcctgtgacattttccttaagcattttagggaccaaaaatgttgatgaaa 36862627  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 38556137 - 38556189
Alignment:
Q  158 agttcctgtgacatttatcttaagcattttagagacaaaaaatgttaatgaaa 210  Q
    ||||||||||||||||  |||||||||||||| ||| ||||||||| ||||||    
T  38556137 agttcctgtgacattttccttaagcattttagggaccaaaaatgttgatgaaa 38556189  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 210
Target Start/End: Original strand, 14370036 - 14370083
Alignment:
Q  163 ctgtgacatttatcttaagcattttagagacaaaaaatgttaatgaaa 210  Q
    ||||||||||| ||||||||||||||| ||| |||| |||||||||||    
T  14370036 ctgtgacatttttcttaagcattttagggaccaaaactgttaatgaaa 14370083  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 31765055 - 31765100
Alignment:
Q  158 agttcctgtgacatttatcttaagcattttagagacaaaaaatgtt 203  Q
    ||||||||||||||||  |||||||||||||||||| |||| ||||    
T  31765055 agttcctgtgacattttccttaagcattttagagaccaaaagtgtt 31765100  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 7958587 - 7958547
Alignment:
Q  163 ctgtgacatttatcttaagcattttagagacaaaaaatgtt 203  Q
    |||||||||||  |||||||||||||| |||||||||||||    
T  7958587 ctgtgacattttccttaagcattttagggacaaaaaatgtt 7958547  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 40167215 - 40167267
Alignment:
Q  158 agttcctgtgacatttatcttaagcattttagagacaaaaaatgttaatgaaa 210  Q
    |||| ||||||||||| | ||||||||||||| ||||||||||||| ||||||    
T  40167215 agtttctgtgacattttttttaagcattttagggacaaaaaatgttgatgaaa 40167267  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 30925634 - 30925587
Alignment:
Q  163 ctgtgacatttatcttaagcattttagagacaaaaaatgttaatgaaa 210  Q
    ||||||||||| ||||||||||||||||||| |||| |||| ||||||    
T  30925634 ctgtgacatttttcttaagcattttagagaccaaaactgttgatgaaa 30925587  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 42418897 - 42418858
Alignment:
Q  164 tgtgacatttatcttaagcattttagagacaaaaaatgtt 203  Q
    |||||||||| ||||||||||||||||||| |||||||||    
T  42418897 tgtgacatttttcttaagcattttagagactaaaaatgtt 42418858  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 40393421 - 40393466
Alignment:
Q  158 agttcctgtgacatttatcttaagcattttagagacaaaaaatgtt 203  Q
    ||||||||||| ||||  |||||||||||||| |||||||||||||    
T  40393421 agttcctgtgatattttccttaagcattttagggacaaaaaatgtt 40393466  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 16516355 - 16516407
Alignment:
Q  158 agttcctgtgacatttatcttaagcattttagagacaaaaaatgttaatgaaa 210  Q
    ||||||||||||||||  ||||||||||||| ||| ||||||| || ||||||    
T  16516355 agttcctgtgacattttccttaagcattttaaagataaaaaatattgatgaaa 16516407  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 28215839 - 28215875
Alignment:
Q  162 cctgtgacatttatcttaagcattttagagacaaaaa 198  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  28215839 cctgtgacatttttcttaagcattttagagactaaaa 28215875  T

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Target: scaffold0001 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 180509 - 180550
Alignment:
Q  162 cctgtgacatttatcttaagcattttagagacaaaaaatgtt 203  Q
    |||||||||||| ||||||||||||||| ||| |||||||||    
T  180509 cctgtgacatttttcttaagcattttagggaccaaaaatgtt 180550  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 24797044 - 24797081
Alignment:
Q  166 tgacatttatcttaagcattttagagacaaaaaatgtt 203  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  24797044 tgacatttttcttaaacattttagagacaaaaaatgtt 24797081  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 4062572 - 4062532
Alignment:
Q  163 ctgtgacatttatcttaagcattttagagacaaaaaatgtt 203  Q
    ||||||||||| ||||||||||||||||||| || ||||||    
T  4062572 ctgtgacatttttcttaagcattttagagactaagaatgtt 4062532  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 30187929 - 30187884
Alignment:
Q  158 agttcctgtgacatttatcttaagcattttagagacaaaaaatgtt 203  Q
    ||||| |||||||||| ||||||||||||||||||| |||| ||||    
T  30187929 agttcttgtgacatttttcttaagcattttagagaccaaaattgtt 30187884  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 7730765 - 7730717
Alignment:
Q  162 cctgtgacatttatcttaagcattttagagacaaaaaatgttaatgaaa 210  Q
    ||||||||||||  |||||||||||||| ||| ||||||||| ||||||    
T  7730765 cctgtgacattttccttaagcattttagggaccaaaaatgttgatgaaa 7730717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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