View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11211_high_14 (Length: 271)
Name: NF11211_high_14
Description: NF11211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11211_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 15474518 - 15474761
Alignment:
| Q |
19 |
tctacaaacttgttttttgcttataaatatgatcggaaagagtaataaaatgctaagaatttgtacctctgcttctaaagcttcaaatgtattgacaaac |
118 |
Q |
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| T |
15474518 |
tctacaaacttgttttttgcttataaatatgatcggaaagagtaataaaatgctaagaatttgtacctctgcttctaaagcttcaaatgtattgacaaac |
15474617 |
T |
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| Q |
119 |
atccaatcagcttgatttaaattagagaattgattcaacttcatagccatataagcaggataactttccggaaaccttataaaacttggaagatctctag |
218 |
Q |
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| T |
15474618 |
atccaatcagcttgatttaaattagagaattgattcaacttcatagccatataagcaggataactttcaggaaaccttataaaacttggaagatctctag |
15474717 |
T |
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| Q |
219 |
aattcaatggaggaagaccaggtacaatcaaaggcaattcatct |
262 |
Q |
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| T |
15474718 |
aattcaatggaggaagaccaggtacaatcaaaggcaattcatct |
15474761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 61 - 261
Target Start/End: Original strand, 15467009 - 15467209
Alignment:
| Q |
61 |
taataaaatgctaagaatttgtacctctgcttctaaagcttcaaatgtattgacaaacatccaatcagcttgatttaaattagagaattgattcaacttc |
160 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| ||| |
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| T |
15467009 |
taataaaatgctaagaatttgtacctctccttctaaagcttcaaatgtattgacaaacatccaatcagcttgatccaaatttgagaattgactcaatttc |
15467108 |
T |
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| Q |
161 |
atagccatataagcaggataactttccggaaaccttataaaacttggaagatctctagaattcaatggaggaagaccaggtacaatcaaaggcaattcat |
260 |
Q |
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| T |
15467109 |
attgccatataagcagggtaactttcaggaaaccttataaaacttggaagatctctagaattcaatggaggaagatcaggtacaaccaaaggcaattcat |
15467208 |
T |
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| Q |
261 |
c |
261 |
Q |
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| T |
15467209 |
c |
15467209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 50561097 - 50561050
Alignment:
| Q |
18 |
atctacaaacttgttttttgcttataaatatgatcggaaagagtaata |
65 |
Q |
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| T |
50561097 |
atctaaaaaattattttttgcttataaatatgatcggagagagtaata |
50561050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 20814858 - 20814892
Alignment:
| Q |
28 |
ttgttttttgcttataaatatgatcggaaagagta |
62 |
Q |
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| T |
20814858 |
ttgttttttgcttataaatatgatcggaaggagta |
20814892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 1610003 - 1609959
Alignment:
| Q |
18 |
atctacaaacttgttttttgcttataaatatgatcggaaagagta |
62 |
Q |
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| T |
1610003 |
atctaaaaagttgttttttgcttataaatgtgatcggatagagta |
1609959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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