View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11211_high_15 (Length: 271)
Name: NF11211_high_15
Description: NF11211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11211_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 52483985 - 52483744
Alignment:
| Q |
11 |
cagacacattacgttcaacccgagtctgagtctgactcaactaagcctcaactcgttagaaaaccgtctcttttacaacgagtcatgtccttcaatctca |
110 |
Q |
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| T |
52483985 |
cagacacattacgttcaacccgagtctgagtctgactcaactaagcctcaactcgttagaaaaccgtctcttttacaacgagtcatgtccttcaatctca |
52483886 |
T |
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| Q |
111 |
acaaaaacgaaccagcacaaccagaagctgaaaacccatctctgaaccaggtaaagagcaaggtggagatgaagaaatcagcgagcgagaaaacgtttga |
210 |
Q |
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| T |
52483885 |
acaaaaacgtaccagcacaaccggaagctgaaaacccatctctgaaccaggtaaagagcaaggtggagatgaagaaatcagcgagcgagaaaacgtttga |
52483786 |
T |
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| Q |
211 |
acggggggaagaagatgaagaagcggtggagagaagaaggcc |
252 |
Q |
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| T |
52483785 |
acggggggaagaagatgaagaaacggtggagagaagaaggcc |
52483744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 52464762 - 52464696
Alignment:
| Q |
70 |
aaaaccgtctcttttacaacgagtcatgtccttcaatctcaacaaaaacgaaccagcacaaccagaa |
136 |
Q |
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| T |
52464762 |
aaaaccttcactgttacagcgagtcttgtctttcaatctcaacaaacacgaaccagcacaaacagaa |
52464696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 52484063 - 52483995
Alignment:
| Q |
56 |
cctcaactcgttagaaaaccgtctcttttacaacgagtcatgtccttcaatctcaacaaaaacgaacca |
124 |
Q |
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| T |
52484063 |
cctcaactcgttcgaaaaccttctttgttagagagagttatgtccttcaatctcaacaaacacgaacca |
52483995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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