View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11211_high_16 (Length: 249)
Name: NF11211_high_16
Description: NF11211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11211_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 4177813 - 4178045
Alignment:
| Q |
1 |
agactcttcttcgtttgtaattatttcaaagaatccgttgtgcgcgaggtagcgcatgagacgccgcacgttacctattttcgacgatggaacttgaaga |
100 |
Q |
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| T |
4177813 |
agactcttcttcttttgtaattatctcaaagaatccgttgtgcgcgaggtaacgcatgagacgccgcacgttacctattttcgacgatggaacttgaaga |
4177912 |
T |
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| Q |
101 |
attgaaactaaatttgaaagggaaattggtttgccatgattgtgaataatatttggtatgttcatttcaacagcccatttaagagacatggaatctatga |
200 |
Q |
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| T |
4177913 |
attgaaactaaatttgaaagtgaaattggtttgccatgattgtgaataatatttggtatgttcatttcaacagcccatttaagagacatggaatctatga |
4178012 |
T |
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| Q |
201 |
aggcatatatgtgtttgtataataaagcttgtg |
233 |
Q |
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| T |
4178013 |
aggcaaatatgtgtttgtataataaagcttgtg |
4178045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 14 - 233
Target Start/End: Complemental strand, 4159784 - 4159565
Alignment:
| Q |
14 |
tttgtaattatttcaaagaatccgttgtgcgcgaggtagcgcatgagacgccgcacgttacctattttcgacgatggaacttgaagaattgaaactaaat |
113 |
Q |
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| T |
4159784 |
tttgtaattatctcaaagaatccattgtgtgcgaggtaacgcatgagacgctgcacgttatcgactttggttgatggaatttgaagaattgaaactaagt |
4159685 |
T |
|
| Q |
114 |
ttgaaagggaaattggtttgccatgattgtgaataatatttggtatgttcatttcaacagcccatttaagagacatggaatctatgaaggcatatatgtg |
213 |
Q |
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| T |
4159684 |
ttgaaagagtaattggtttgccatgattgtggataatatttggtatgttcatctcaattgaccatttcagagacatagaatctacaaaggcatacatgtt |
4159585 |
T |
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| Q |
214 |
tttgtataataaagcttgtg |
233 |
Q |
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| T |
4159584 |
tttgtataataaagcttgtg |
4159565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 26 - 233
Target Start/End: Original strand, 4172230 - 4172437
Alignment:
| Q |
26 |
tcaaagaatccgttgtgcgcgaggtagcgcatgagacgccgcacgttacctattttcgacgatggaacttgaagaattgaaactaaatttgaaagggaaa |
125 |
Q |
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| T |
4172230 |
tcaaagaatccattgtgtgcaaggagacgcatgagacgctgcacgttatcgactttggttgatggaatttgaagaattgaaactaagtttgaaagagtaa |
4172329 |
T |
|
| Q |
126 |
ttggtttgccatgattgtgaataatatttggtatgttcatttcaacagcccatttaagagacatggaatctatgaaggcatatatgtgtttgtataataa |
225 |
Q |
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| T |
4172330 |
ttggtttgccatgattgtagataatagttggtatgtccatttcaactgaccatttaagagacatggaatctatgaaagcatacatgtttttgtataatag |
4172429 |
T |
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| Q |
226 |
agcttgtg |
233 |
Q |
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| T |
4172430 |
agcttgtg |
4172437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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