View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11211_high_3 (Length: 472)
Name: NF11211_high_3
Description: NF11211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11211_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 41 - 471
Target Start/End: Original strand, 38532404 - 38532837
Alignment:
| Q |
41 |
aagtaaggtaatttatagcttactaaaattaatatcgaagataatcgaacatgagaaccttgaaagaaacatactgcaagatcccagaccaatatcacaa |
140 |
Q |
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|||||||||||||||||| ||| ||||||| | ||| |||||||||||||||||||| ||| ||||||||||||| ||||||| |||| ||||||||||| |
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| T |
38532404 |
aagtaaggtaatttatagtttattaaaattgacatcaaagataatcgaacatgagaatcttaaaagaaacatacttcaagatctcagatcaatatcacaa |
38532503 |
T |
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| Q |
141 |
cgagtatttctacaacggactttgatcaagtaagaacatgtcttctccttggccatgattaccgtttcaaacaaccaagttgtccatacagaagctgtt- |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38532504 |
cgagtatttctacaacggactttgatcaagtaagaacatgtcttctccttggccatgattaccgtttcaaccaaccaagttgtccatacagaagctgttg |
38532603 |
T |
|
| Q |
240 |
--atgttccaacagaagcttttcaacaagtttttatttgtttcctatcccaaaatatcatttgtacacaactacatagtctaatatatttgagaatctga |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38532604 |
ttatgttccaacagaagcttttcaacaagtttttatttgtttactatcccaaaatatcatttgtacacaactacatagtctaatatatttgagaatctga |
38532703 |
T |
|
| Q |
338 |
agcacatttaaattttgtctttcaattaaattaaaaataattaattttcatagcatgcatataaaaaagagatccatgaccacatgtacaacaaaatgaa |
437 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38532704 |
agcacatttaaattttgtctttcaattaaattaaaaataattaattttcatagcatgcatataaaaaagagatccatgaccacatgtacaacaaaatgaa |
38532803 |
T |
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| Q |
438 |
tcttgatttcttcccttttgcctttgcttctcct |
471 |
Q |
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||||||||||||||||||||| ||||||| |||| |
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| T |
38532804 |
tcttgatttcttcccttttgcttttgcttttcct |
38532837 |
T |
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