View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11211_low_11 (Length: 302)
Name: NF11211_low_11
Description: NF11211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11211_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 110 - 211
Target Start/End: Original strand, 2492770 - 2492871
Alignment:
| Q |
110 |
acataatattgaaccataaaccctgctggagttttctcctgcaatggtttggtaaaatccatggtgatcaaccacgtttgaagcaagagaatccaataaa |
209 |
Q |
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| T |
2492770 |
acataatattgaaccataaatcctgctgttgttttctcctgcaatggtttggtaaaatccatggtgatcaaccacgtttgaagcaagagaattcaataaa |
2492869 |
T |
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| Q |
210 |
gt |
211 |
Q |
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|| |
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| T |
2492870 |
gt |
2492871 |
T |
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Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 110 - 208
Target Start/End: Original strand, 2489489 - 2489587
Alignment:
| Q |
110 |
acataatattgaaccataaaccctgctggagttttctcctgcaatggtttggtaaaatccatggtgatcaaccacgtttgaagcaagagaatccaataa |
208 |
Q |
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| T |
2489489 |
acataatattgaaccataaaccctgctggagttttctcctacagtggtttggtaaaatccttggtgatcaaccacatttgaagcaagagaatccaataa |
2489587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 208
Target Start/End: Original strand, 2495900 - 2495998
Alignment:
| Q |
110 |
acataatattgaaccataaaccctgctggagttttctcctgcaatggtttggtaaaatccatggtgatcaaccacgtttgaagcaagagaatccaataa |
208 |
Q |
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| T |
2495900 |
acataatattgtaccataaagcctgttaggcttttttcctacaatggtttggtaaaatccatggctatcaacgacgtttgaagcaagagaatccaataa |
2495998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 4150132 - 4150046
Alignment:
| Q |
7 |
tatagatgttggtttcgtgtccggtttgtatgtttgtgtttatgtttcataacatttgatataaggtaaaatcaattctatcactct |
93 |
Q |
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| T |
4150132 |
tatagatgtgggtgccgtgttcggtttgtatgtttgtgtcaatgtttcatatcatttgatagaaggtaaaatcaattctaacactct |
4150046 |
T |
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