View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11211_low_13 (Length: 280)
Name: NF11211_low_13
Description: NF11211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11211_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 21344002 - 21343752
Alignment:
| Q |
18 |
atgaattggcacgttggttccaccaaactgaagaaccacccagtaaaaactaaaaaccacattgcatgcacaccaaaactaactactaagctttatgaaa |
117 |
Q |
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| T |
21344002 |
atgaattggcacggtggttccaccaaactgaagaaccacccagtaaaaactaaaaaccacattgcatgcacaccaaaactaactactaagctttatgaaa |
21343903 |
T |
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| Q |
118 |
ttttagttagcatataaatataataactgcaagtacatgaaggatgaaaattggttaggaataaattaaaatctcactttgaggtaagcagtgaagtgat |
217 |
Q |
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| T |
21343902 |
ttttagttagcatataaatataataactgcaagtacatgaaggatgaaaattggttaggaataaattaaaatctcactttgaggtaagcagtgaagtgat |
21343803 |
T |
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| Q |
218 |
attgggcgctgtacaactacatccatttagattactgacttgttctgttct |
268 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
21343802 |
attgggcgctgtacaactacatccatttagataactgacttgttctgttct |
21343752 |
T |
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