View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11211_low_14 (Length: 273)
Name: NF11211_low_14
Description: NF11211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11211_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 15474984 - 15475247
Alignment:
| Q |
1 |
agaaagagttcaacatttttggcttgtgaaaaaccggattcgtcgaacccatcagagattggttcgacggagatgtttggtgcagtgatggatttaacag |
100 |
Q |
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| T |
15474984 |
agaaagagttcaacatttttggcttgtgaaaaaccggattcgtcgaacccatcagagattggttcgacggagatgtttggtgcagtgatggatttaacag |
15475083 |
T |
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| Q |
101 |
tgtaatgggttgttgcaaatgttgttttgatgccttttgaaactaatctttttgagaattggattagtggactaatgtgtccttgtgctgggtatggaat |
200 |
Q |
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| T |
15475084 |
tgtaatgggttgttgcaaatgttgttttgatgccttttgaaactaatctttttgagaattggattagtggactaatgtgtccttgtgctgggtatggaat |
15475183 |
T |
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| Q |
201 |
cactaagacatgaacattgttgttgtagttttgcctctgtaccaccatgtttgttttctctctg |
264 |
Q |
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| T |
15475184 |
cactaagacatgaacattgttgttgtagttttgcctctgtaccaccatgtttgttttctctctg |
15475247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 15467433 - 15467658
Alignment:
| Q |
1 |
agaaagagttcaacatttttggcttgtgaaaaaccggattcgtcgaacccatcagagattggttcgacggagatgtttggtgcagtgatggatttaacag |
100 |
Q |
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||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||| || ||||||| ||||| |
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| T |
15467433 |
agaaagagttcaacattgttggcttgtgtaaaaccggattcgtcgaacccatcagagattggttcgacggatacgtttggtgcggttatggattgaacag |
15467532 |
T |
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| Q |
101 |
tgtaatgggttgttgcaaatgttgttttgatgccttttgaaactaatctttttgagaattggattagtggactaatgtgtccttgtgctgggtatggaat |
200 |
Q |
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| T |
15467533 |
tgtaatgtgttgttgcaaatgttgttttgatgccttttgaaaccaatcgttttgagaattggattagtggactaatgtgtccttgtgctggatatgggat |
15467632 |
T |
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| Q |
201 |
cactaagacatgaacattgttgttgt |
226 |
Q |
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| T |
15467633 |
cactaacacatgaacgttgttgttgt |
15467658 |
T |
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