View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11211_low_19 (Length: 243)
Name: NF11211_low_19
Description: NF11211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11211_low_19 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0176 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 38725175 - 38724950
Alignment:
| Q |
18 |
agttgttgcatccgcaattcagtataaaaattctcaagatgggaaaaattatctaagagtaaaggtagtaaactatgcaaaagcctctcagaacttagga |
117 |
Q |
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| T |
38725175 |
agttgttgcatccgcaattcagtataaaaattctcaagatgggaaaaattatctaagactaaaggtagtaaactatgcaaaagcctctcagaacttagga |
38725076 |
T |
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| Q |
118 |
atttcaataaatgggttaagtacaaatgtgcaaccatctggttcatcaatggcagtgcttacatcctccggtataatggatgagaattccttcgcagagc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38725075 |
atttcaataaatgggttaagtacaaatgtgcaaccatctggttcatcaatggcagtacttacatcctccggtataatggatgagaattccttcgcagagc |
38724976 |
T |
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| Q |
218 |
caatgaagatttcgccccaacgaact |
243 |
Q |
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|||||||||||||||||||||||||| |
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| T |
38724975 |
caatgaagatttcgccccaacgaact |
38724950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 32098 - 32162
Alignment:
| Q |
20 |
ttgttgcatccgcaattcagtataaaaattctcaagatgggaaaaattatctaagagtaaaggta |
84 |
Q |
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| T |
32098 |
ttgttgcatccgcaattgagtataaaaattctcaagatgggaagaattatctaagagtaaaggta |
32162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 220
Target Start/End: Original strand, 32333 - 32435
Alignment:
| Q |
118 |
atttcaataaatgggttaagtacaaatgtgcaaccatctggttcatcaatggcagtgcttacatcctccggtataatggatgagaattccttcgcagagc |
217 |
Q |
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| T |
32333 |
atttcaataaatggtttaaattcaattgttcaatcgtctaattcatcaatggtggtgcttacgtcctccaatagaatggatgagaattccttctcggagc |
32432 |
T |
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| Q |
218 |
caa |
220 |
Q |
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||| |
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| T |
32433 |
caa |
32435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 34165277 - 34165341
Alignment:
| Q |
20 |
ttgttgcatccgcaattcagtataaaaattctcaagatgggaaaaattatctaagagtaaaggta |
84 |
Q |
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| T |
34165277 |
ttgttgcatccgcaattgagtataaaaattctcaagatgggaagaattatctaagagtaaaggta |
34165341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 34171774 - 34171838
Alignment:
| Q |
20 |
ttgttgcatccgcaattcagtataaaaattctcaagatgggaaaaattatctaagagtaaaggta |
84 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34171774 |
ttgttgcatccgcaattgagtataaaaattctcaagatgggaagaattatctaagagtaaaggta |
34171838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 34215371 - 34215435
Alignment:
| Q |
20 |
ttgttgcatccgcaattcagtataaaaattctcaagatgggaaaaattatctaagagtaaaggta |
84 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34215371 |
ttgttgcatccgcaattgagtataaaaattctcaagatgggaagaattatctaagagtaaaggta |
34215435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 220
Target Start/End: Original strand, 34165512 - 34165614
Alignment:
| Q |
118 |
atttcaataaatgggttaagtacaaatgtgcaaccatctggttcatcaatggcagtgcttacatcctccggtataatggatgagaattccttcgcagagc |
217 |
Q |
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|||||||||||||| |||| | ||| ||| ||| | ||| ||||||||||| |||||||| |||||| || ||||||||||||||||||| | |||| |
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| T |
34165512 |
atttcaataaatggtttaaattcaattgttcaatcgtctaattcatcaatggtggtgcttacgtcctccaatagaatggatgagaattccttctcggagc |
34165611 |
T |
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| Q |
218 |
caa |
220 |
Q |
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||| |
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| T |
34165612 |
caa |
34165614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 220
Target Start/End: Original strand, 34172009 - 34172111
Alignment:
| Q |
118 |
atttcaataaatgggttaagtacaaatgtgcaaccatctggttcatcaatggcagtgcttacatcctccggtataatggatgagaattccttcgcagagc |
217 |
Q |
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|||||||||||||| |||| | ||| ||| ||| | ||| ||||||||||| || ||||| |||||| || ||||||||||||||||||| | |||| |
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| T |
34172009 |
atttcaataaatggtttaaattcaattgttcaatcgtctaattcatcaatggtggtacttacgtcctccaatagaatggatgagaattccttctcggagc |
34172108 |
T |
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| Q |
218 |
caa |
220 |
Q |
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||| |
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| T |
34172109 |
caa |
34172111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 210
Target Start/End: Original strand, 34215606 - 34215698
Alignment:
| Q |
118 |
atttcaataaatgggttaagtacaaatgtgcaaccatctggttcatcaatggcagtgcttacatcctccggtataatggatgagaattccttc |
210 |
Q |
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|||| ||||||||| |||| | ||| ||| ||| | ||| ||||||||||| |||||||| |||||| || ||||||||||||||||||| |
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| T |
34215606 |
attttaataaatggtttaaattcaactgttcaatcgtctaattcatcaatggtggtgcttacgtcctccaatagaatggatgagaattccttc |
34215698 |
T |
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