View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11211_low_5 (Length: 417)
Name: NF11211_low_5
Description: NF11211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11211_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 14 - 399
Target Start/End: Original strand, 54701388 - 54701769
Alignment:
| Q |
14 |
agaggaattcgaaaatgatatatgattcttgtctcctctagtcatttgctatataccaagaatatctcaactactatgacgctaacttgtattctcattt |
113 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54701388 |
agaggaatttgaaaatgatatatgattcttgtctcctctattcatttgctatataccaagaatatctcaactactatgacgctaacttgtattctcattt |
54701487 |
T |
|
| Q |
114 |
cttagttatctttattttcagagaaaaacaatggcaggtgatgtagaaacgaaccccaaaagctctctgcatagtcgcagcaacgactagcttaccctcg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54701488 |
cttagttatctttattttcagagaaaaacaatggcaggtgatgtagaaacgaaccccaaaagctctctgcatagtcgcagcaacgactagcttaccctcg |
54701587 |
T |
|
| Q |
214 |
gcatcacaccctaccgtatcacatcatcaataagtcacacactcgatgacttgcaggatttgtataggcacatatatataagctactccacatgacaatt |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
54701588 |
gcatcacaccctaccgtatcacatcatcaataagtcacacactcgataacttgcaggatttgtataggcac----atataagctactccacatgacaatt |
54701683 |
T |
|
| Q |
314 |
tcccaacaagcattggcacgataaggcagcgagaaacaagttgatgaactatttgatggatctagttaaagattgtatggtgcaat |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54701684 |
tcccaacaagcattggcacgataaggcagcgagaaacaagttgatgaactatttgatggatctagttaaagattgtatggtgcaat |
54701769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University