View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11211_low_6 (Length: 403)
Name: NF11211_low_6
Description: NF11211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11211_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 52484159 - 52484507
Alignment:
| Q |
1 |
tgatacggttgagaagtgaaggtgaacgattgagttgaggttgttggatttggtcgtttttgggtggaccattgaagcgagaagctagagctatggtacc |
100 |
Q |
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| T |
52484159 |
tgatacggttgagaagtgaaggtgaacgattgagttgaggttgttggatttggtcgtttttgggtggaccattgaagcgagaagctagagctatggtacc |
52484258 |
T |
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| Q |
101 |
tatgacaaggtttacaatgatgaaaatagaagaaggtgtgaaccatgttgctatgaaagttgttgggtctgccatcgttgttaatttcttaatttggagg |
200 |
Q |
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| T |
52484259 |
tatgacaaggtttacaatgatgaaaatagaagaaggtgtgaaccatgttgctatgaaagttgttgggtctgccatcgttgttaatttcttaatttggagg |
52484358 |
T |
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| Q |
201 |
gtttttgcgttgagatcgagcttcaacactgactgaagagtgaagacaatgtagggtgggggtgtaaatagagaaaggaaaatcaccatttacgtcttag |
300 |
Q |
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| T |
52484359 |
gtttttgcgttga----gaccttcaac----actgaagagtgaa---------------gggtgtaaatagagaaaggaaaatcaccatttacgtc-tag |
52484434 |
T |
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| Q |
301 |
tcatgtagtcagaagaaaggag-aaaaaagttgataaataaataaatatcatgggggtggggaacttgtttct |
372 |
Q |
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| T |
52484435 |
tcatgtagtcagaagaaaggagaaaaaaagttgataaataaataaatatcatgggggtggggaacttgtttct |
52484507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 52464891 - 52464962
Alignment:
| Q |
74 |
gaagcgagaagctagagctatggtacctatgacaaggtttacaatgatgaaaatagaagaaggtgtgaacca |
145 |
Q |
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|||||||||| | ||||| |||||||| ||||||||||| |||| |||||||| || ||| ||||||||||| |
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| T |
52464891 |
gaagcgagaaacgagagcaatggtaccaatgacaaggttaacaaagatgaaaagaggagagggtgtgaacca |
52464962 |
T |
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