View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11211_low_8 (Length: 344)
Name: NF11211_low_8
Description: NF11211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11211_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 10 - 330
Target Start/End: Complemental strand, 26611112 - 26610791
Alignment:
| Q |
10 |
gcagagaaagtttatgcatgtgtgttgtgtacagagtgaaaaatattaatttaa-gttttaatttgaccttactccttttcctatgccgtgtcttttgtt |
108 |
Q |
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| T |
26611112 |
gcagagaaagtttatgcatgtgtgttgtgtacagagtgaaaaatattaatttaaagttttaatttgaccttactccttttcctatgccgtgtcttttgtt |
26611013 |
T |
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| Q |
109 |
ggttaattatattttgattacagacacatgtgcttgagtaattaactcaaccaatcatattactctttttattgctttatgatgggaccatagtatatcc |
208 |
Q |
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| T |
26611012 |
ggttaattatattttgattacagacacatgtgcttgagtaattaactcaaccaatcatattactctttttattgctttatgatgggaccatagtatatcc |
26610913 |
T |
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| Q |
209 |
caccacatgaccccaaatccattaatcataagctattacagaacaaatccaccaaaataacacagggcagttacagttaggtttgaaattaaggatatac |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26610912 |
caccacatgaccccaaatccattaatcataagctattacagaacaaatccaccaaaataacacagggcagttacagttaggtttgaaattaaggatatac |
26610813 |
T |
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| Q |
309 |
tttaatatttttataggaatct |
330 |
Q |
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|||||||||||||||||||||| |
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| T |
26610812 |
tttaatatttttataggaatct |
26610791 |
T |
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