View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11212_high_1 (Length: 588)
Name: NF11212_high_1
Description: NF11212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11212_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 488; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 29 - 565
Target Start/End: Complemental strand, 6833823 - 6833287
Alignment:
| Q |
29 |
agtaacatcacttacaaggttttctttaatatattctttcttttcaactaggttttccaacattgttttatatgattattatatttgaaaagagaataat |
128 |
Q |
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| T |
6833823 |
agtaacatcacttacaaggttttctttaatatattctttcttttcaacaaggttttccaacattgttttatatgattattatatttgaaaaaagaataat |
6833724 |
T |
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| Q |
129 |
ttatgattgatcgacaatgtaagaagttttatatcgatggtttataagaaattcaaaattaatcgcttactataattcacaataacaagtgacttaattt |
228 |
Q |
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| T |
6833723 |
ttatgattgatcgacaatgtaaaaagttttatatcgatggtttataagaaattcaaaattaatcgcttactataattcacaataacaagtgacttaattt |
6833624 |
T |
|
| Q |
229 |
atgcctaaacattttctttgtaatactgataagtgataaaaggtgtttgtgccaatgtcaggttcaattgttgatgaggacaaggaagaaagatatgaca |
328 |
Q |
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| T |
6833623 |
atgcctaaacattttctttgtaatactgataagtgataaaaggtgtttgtgccaatgtcaggttcaattgttgatgaggacaaggaagaaagatatgaca |
6833524 |
T |
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| Q |
329 |
ttcaagcacacacacagacctctcatcactatccactgaactatggaacatgcatgaccttcatatctttgttgaataggttttttaaagtaacaagtat |
428 |
Q |
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| T |
6833523 |
ttcaagcacacacacagacctctcatcactatccactgaactatggaacatgcatgaccttcatatctttgttgaataggttttttaaagtaacaagtat |
6833424 |
T |
|
| Q |
429 |
gtcaatcttctttcatttaattattactcggttgannnnnnnnnnncaccttatagttatagcctagcttatctattatttttctattatattacagcaa |
528 |
Q |
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| T |
6833423 |
gtcaatcttctttcatttaattattactcggttgatttttttttttcaccttatagttatagcctagcttatctattatttttctattatattacagcaa |
6833324 |
T |
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| Q |
529 |
caggaaaagatacaaaagctgcttcaactagtgatga |
565 |
Q |
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| T |
6833323 |
caggaaaagatacaaaagctgctgcaactagtgatga |
6833287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 281 - 463
Target Start/End: Complemental strand, 6819018 - 6818830
Alignment:
| Q |
281 |
caatgtcaggttcaattgttgatgaggacaaggaagaaagatatgac---attca---agcacacacacagacctctcatcactatccactgaactatgg |
374 |
Q |
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| T |
6819018 |
caatgtcaggttcaatagttgatgaggacaaggaagaaagatatgaccatattaacgaagcatacactcagacttctcgtcactatccattgaactatgg |
6818919 |
T |
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| Q |
375 |
aacatgcatgaccttcatatctttgttgaataggttttttaaagtaacaagtatgtcaatcttctttcatttaattattactcggttga |
463 |
Q |
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| T |
6818918 |
aacatgcatgaccttcttatctttgttgaataggttttttaaagtaacaagtatgtcaatcttctttcatttaattattacttggttga |
6818830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 284 - 451
Target Start/End: Complemental strand, 6810817 - 6810644
Alignment:
| Q |
284 |
tgtcaggttcaattgttgatgaggacaaggaagaaagatatgac---attca---agcacacacacagacctctcatcactatccactgaactatggaac |
377 |
Q |
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| T |
6810817 |
tgtcaggttcgtttgttgatgacgacaaggaagaaagatatgaccatattaacgaagcatacactcagacttctcgtcactatccattgaactatggaac |
6810718 |
T |
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| Q |
378 |
atgcatgaccttcatatctttgttgaataggttttttaaagtaacaagtatgtcaatcttctttcatttaatta |
451 |
Q |
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| T |
6810717 |
atgcatgaccttcttatctttgttgaatagtggctttaaagtaacaagtatgtcaatcttgtttcatttaatta |
6810644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 502 - 565
Target Start/End: Complemental strand, 6818777 - 6818714
Alignment:
| Q |
502 |
tattatttttctattatattacagcaacaggaaaagatacaaaagctgcttcaactagtgatga |
565 |
Q |
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| T |
6818777 |
tattattgttctattatattacagcaacacgaaaagatacaaatgctgctgcaactagtgatga |
6818714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 511 - 565
Target Start/End: Complemental strand, 6810601 - 6810550
Alignment:
| Q |
511 |
tctattatattacagcaacaggaaaagatacaaaagctgcttcaactagtgatga |
565 |
Q |
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| T |
6810601 |
tctattataatacagcaacaggaaaagattcaaa---tgctgcaactagtgatga |
6810550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 6819452 - 6819396
Alignment:
| Q |
59 |
atattctttcttttcaactaggttttccaacattgttttatatgattattatatttg |
115 |
Q |
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||||||||||| || ||| |||||||| |||||||| |||||||||||||||||| |
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| T |
6819452 |
atattctttctattaaacaaggttttcactcattgtttgatatgattattatatttg |
6819396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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