View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11212_high_2 (Length: 581)
Name: NF11212_high_2
Description: NF11212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11212_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 72 - 578
Target Start/End: Complemental strand, 11119628 - 11119116
Alignment:
| Q |
72 |
agacataacttgtgacggaaagagaggatatactataat-----gaaaattacttagnnnnnnnnngg-ttatcttgcacacataaagcacataacatac |
165 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
11119628 |
agacataacttgtgacggaaagagaggatatactataatataatgaaaattacttagaaaaaaaaaagattatcttgcacacataaagcacataacatac |
11119529 |
T |
|
| Q |
166 |
acatcaaggcacagatgtgcctagctagcacttttctttattagtgaattccaatcaccacatgcatttcaactaaagtaacccacattcatttagattg |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119528 |
acatcaaggcacagatgtgcctagctagcacttttctttattagtgaattccaatcaccacatgcatttcaactaaagtaacccacattcatttagattg |
11119429 |
T |
|
| Q |
266 |
aactaaccatatcgtgggtagatt-attctgaggccacactagcaagatccaattcagaagatttcttgttaacaaaattgcactgctttctaatttctc |
364 |
Q |
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| T |
11119428 |
aactaaccatatccccc-tccattgattctgaggtcacactagcaagatccaattcagaagatttcttgttaacaaaattgcactgctttctaatttctc |
11119330 |
T |
|
| Q |
365 |
ctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaacattttggttgtttccaaagttgttgacaat |
464 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119329 |
ctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaacattttggttgtttccaaagttgttgacaat |
11119230 |
T |
|
| Q |
465 |
gctaatggtatctgcacccggtgttgagaacaattcttggtcactctgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtctaattta |
564 |
Q |
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| T |
11119229 |
gctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtcgaattta |
11119130 |
T |
|
| Q |
565 |
tcaggagttgttgg |
578 |
Q |
| |
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|| ||||||||||| |
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| T |
11119129 |
tcgggagttgttgg |
11119116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 175 - 578
Target Start/End: Complemental strand, 11111747 - 11111345
Alignment:
| Q |
175 |
cacagatgtgcctagctagcacttttctttattagtgaattccaatcaccacatgcatttcaactaaagtaacccacattcatttagattgaactaacca |
274 |
Q |
| |
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|||| |||||| |||| ||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11111747 |
cacaaatgtgcttagccagcacttctctttattagtgaattccaatcaccacat----ttcatctaaagtaacccacattcatttagattgaactaacca |
11111652 |
T |
|
| Q |
275 |
tatcg---tgggtagattattctgaggccacactagcaagatccaattcagaagatttcttgttaacaaaattgcactgctttctaatttctcctttctt |
371 |
Q |
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| T |
11111651 |
tatccccttccattgattctgcagaggccacaatgccaagatccaattcagaagatttcttgttaataaaattgcattgttttctaatttctcctttctt |
11111552 |
T |
|
| Q |
372 |
tccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaacattttggttgtttccaaagttgttgacaatgctaatg |
471 |
Q |
| |
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||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||| ||||| ||||||||||||||||| |
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| T |
11111551 |
tccggtaagcacatcaatattacccattttaatcattgaatttataaagttctgaaagaaaacattttggctatttgcaaagctgttgacaatgctaatg |
11111452 |
T |
|
| Q |
472 |
gtatctgcacccggtgttgagaacaattcttggtcactctgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtctaatttatcaggag |
571 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||| |
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| T |
11111451 |
gtatctgcacccggtgttgagaataattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagaagttcttgtccaatgtatcaggag |
11111352 |
T |
|
| Q |
572 |
ttgttgg |
578 |
Q |
| |
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| ||||| |
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| T |
11111351 |
tcgttgg |
11111345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 307 - 578
Target Start/End: Original strand, 10793178 - 10793449
Alignment:
| Q |
307 |
gcaagatccaattcagaagatttcttgttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatca |
406 |
Q |
| |
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|||||||| || ||||||||||| ||||||||||||||||| || || || ||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
10793178 |
gcaagatctaactcagaagattttttgttaacaaaattgcattgtttccttatttctcctttctttccggtaagcacaccaatattacccattttaatca |
10793277 |
T |
|
| Q |
407 |
ttgaatttataaagttctggaagaaaacattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtc |
506 |
Q |
| |
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||| || ||||| ||| |||||| || ||||||| || ||||||| || ||||||||| ||||||||||| |||||||| |||||||||||||| |
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| T |
10793278 |
ttgctttcttaaagctctcaaagaaagcactttggttattggcaaagttattaacaatgctagtggtatctgcatttggtgttgaaaacaattcttggtc |
10793377 |
T |
|
| Q |
507 |
actctgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtctaatttatcaggagttgttgg |
578 |
Q |
| |
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||| |||||||||||||||||| | ||||||||||||||| |||||||||| ||| |||||||||| ||||| |
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| T |
10793378 |
actttgaagcaaaccctttttaacctgaagattgttgtagaagttcttgtccaatgtatcaggagtagttgg |
10793449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 333 - 578
Target Start/End: Complemental strand, 11156842 - 11156597
Alignment:
| Q |
333 |
gttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaa |
432 |
Q |
| |
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||||||||| ||||| || |||||||| ||||||||| | || || ||||| |||||||| |||||||||||||||| | ||||| ||| |||||| |
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| T |
11156842 |
gttaacaaagttgcattgttttctaatctctcctttcgtccctgttagcacaccaatattgcccattttaatcattgcagccttaaagctctcaaagaaa |
11156743 |
T |
|
| Q |
433 |
acattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactctgaagcaaaccctttttacctt |
532 |
Q |
| |
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| T |
11156742 |
gcgttttgatcggtgctgaatttgttgacaatgctaatggtatctgcaccggatgttgagaacaactcttgatcactttggagcaagccctttttcactt |
11156643 |
T |
|
| Q |
533 |
gaagattgttgtagtagttcttgtctaatttatcaggagttgttgg |
578 |
Q |
| |
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|||||||| ||| ||||||||||| |||||||||||||| ||||| |
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| T |
11156642 |
gaagattggagtaatagttcttgtcaaatttatcaggagtcgttgg |
11156597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 334 - 578
Target Start/End: Complemental strand, 11137899 - 11137655
Alignment:
| Q |
334 |
ttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaa |
433 |
Q |
| |
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|||||||||||||| || |||||||| |||||||| || || || ||||| ||||||||||||||||||||||| | | |||| | | |||||| |
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| T |
11137899 |
ttaacaaaattgcaatgttttctaatctctccttttttcccggtcagcacaccaatattacccattttaatcatggcggcttcaaagctatcaaagaaag |
11137800 |
T |
|
| Q |
434 |
cattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactctgaagcaaaccctttttaccttg |
533 |
Q |
| |
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|||||| || | || ||||||||||||||||||||||| ||||| | ||| ||||| | |||||||||||||||||||||||||||||||| || |
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| T |
11137799 |
catttttgtcagcactgaacttgttgacaatgctaatggtatcagcaccagatgtcgagaaaagctcttggtcactctgaagcaaaccctttttaccctg |
11137700 |
T |
|
| Q |
534 |
aagattgttgtagtagttcttgtctaatttatcaggagttgttgg |
578 |
Q |
| |
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||||||| ||||||||||||||| |||||||||||||| ||||| |
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| T |
11137699 |
aagattggagtagtagttcttgtcaaatttatcaggagtcgttgg |
11137655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 449 - 578
Target Start/End: Complemental strand, 11146089 - 11145960
Alignment:
| Q |
449 |
caaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactctgaagcaaaccctttttaccttgaagattgttgtagta |
548 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| | |||||||||||| ||||| ||||| ||||||||||| ||||| |||||||||| ||| || |
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| T |
11146089 |
caaagttgttgacaatgctaatggtatcagcaccagatgttgagaacaactcttgatcactttgaagcaaaccttttttcacttgaagattagagtaata |
11145990 |
T |
|
| Q |
549 |
gttcttgtctaatttatcaggagttgttgg |
578 |
Q |
| |
|
||||||||| |||||||||||||| ||||| |
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| T |
11145989 |
gttcttgtcaaatttatcaggagtagttgg |
11145960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 334 - 578
Target Start/End: Complemental strand, 11150173 - 11149929
Alignment:
| Q |
334 |
ttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaa |
433 |
Q |
| |
|
|||||||| ||||| || |||||||| ||||||| || ||||| | ||| |||||||| |||||||| ||||| | | ||||| ||| || ||| |
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| T |
11150173 |
ttaacaaagttgcattgttttctaatctctccttgtttcccagttaacacaccaatatttcccattttgatcatagcagccttaaagctctcaaaaaaag |
11150074 |
T |
|
| Q |
434 |
cattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactctgaagcaaaccctttttaccttg |
533 |
Q |
| |
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| ||||| | | || |||| ||||||||||||||||||||||||| ||| | |||||||||||| ||||| ||||| || |||||||||||||| |||| |
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| T |
11150073 |
ctttttgatcggttgcaaatttgttgacaatgctaatggtatctgaaccagatgttgagaacaactcttgatcactttggagcaaaccctttttcacttg |
11149974 |
T |
|
| Q |
534 |
aagattgttgtagtagttcttgtctaatttatcaggagttgttgg |
578 |
Q |
| |
|
|||||| ||| ||||||||||| |||||||||||||| ||||| |
|
|
| T |
11149973 |
aagattagagtaatagttcttgtcaaatttatcaggagtcgttgg |
11149929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 468 - 526
Target Start/End: Original strand, 11183613 - 11183671
Alignment:
| Q |
468 |
aatggtatctgcacccggtgttgagaacaattcttggtcactctgaagcaaaccctttt |
526 |
Q |
| |
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||||||||| ||||| ||||| || |||||||||||||||||||||| ||| ||||||| |
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| T |
11183613 |
aatggtatcagcaccaggtgtggaaaacaattcttggtcactctgaaacaacccctttt |
11183671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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