View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11212_high_4 (Length: 430)
Name: NF11212_high_4
Description: NF11212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11212_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 3 - 284
Target Start/End: Complemental strand, 9688517 - 9688238
Alignment:
| Q |
3 |
aatatggaaccatgtccaatttcacaccataaacatgctcatagttgtcactagtatatgcaaacactttaacactcaagtcagattatgagtgaagtgg |
102 |
Q |
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| T |
9688517 |
aatatggaaccatgtccaatttcacaccataaacatgctcatagctgtcactagtatatgcaaactcttcaacac--aagtcagattttgagtgaagtgg |
9688420 |
T |
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| Q |
103 |
gtgaaaattttaatagaatggaatgtgtatctttcttctggtgcatagattctttcaaaggtagagtttgaggagaaattaacgagaaaacagttgaggt |
202 |
Q |
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| T |
9688419 |
gtgaaaattttaatagaatggaatgtgtacctttcttctagtgcatagattctttcaaaggtagagtttgaggagaaattaacgagaaaacagttgaggt |
9688320 |
T |
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| Q |
203 |
tgttgaggaatttctgttgtgatcgacctttgatatcttcatgatttggtgatcaattgttgagggttaacactcgactatc |
284 |
Q |
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| T |
9688319 |
tgttgaggaatttctattgtgatcggcctttgatattttcatgatttggtgatcaattgttgagggttaacactcgactatc |
9688238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 346 - 430
Target Start/End: Complemental strand, 9688171 - 9688087
Alignment:
| Q |
346 |
acaccacactagttatacccaatacagaacttggtgtttaatcttttaactctcaatttgcacacttgttccaacaattgacaat |
430 |
Q |
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| T |
9688171 |
acaccacactagttataccaaatacagaacttggtgtttagtcttttaactctcaatttgcacacttgttccaacaattgacaat |
9688087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 421
Target Start/End: Original strand, 2632623 - 2632671
Alignment:
| Q |
373 |
aacttggtgtttaatcttttaactctcaatttgcacacttgttccaaca |
421 |
Q |
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| T |
2632623 |
aactttgtgtttaatcatttaactctcaattttcacacctattccaaca |
2632671 |
T |
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