View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11212_high_8 (Length: 310)

Name: NF11212_high_8
Description: NF11212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11212_high_8
NF11212_high_8
[»] chr8 (2 HSPs)
chr8 (1-251)||(14995220-14995470)
chr8 (245-281)||(22732207-22732243)
[»] chr4 (14 HSPs)
chr4 (1-251)||(41860613-41860863)
chr4 (2-251)||(52681467-52681716)
chr4 (3-118)||(30576573-30576688)
chr4 (94-248)||(15056967-15057124)
chr4 (69-115)||(47964110-47964156)
chr4 (245-281)||(41861939-41861975)
chr4 (245-281)||(41862030-41862066)
chr4 (245-281)||(41862121-41862157)
chr4 (245-281)||(41862212-41862248)
chr4 (245-281)||(41862403-41862439)
chr4 (245-281)||(41946638-41946674)
chr4 (245-281)||(41946729-41946765)
chr4 (245-281)||(52680359-52680395)
chr4 (245-281)||(53285696-53285732)
[»] chr3 (15 HSPs)
chr3 (1-251)||(26950254-26950504)
chr3 (1-251)||(36092543-36092793)
chr3 (1-251)||(18200483-18200733)
chr3 (27-113)||(12807577-12807663)
chr3 (20-107)||(14458470-14458557)
chr3 (245-281)||(854976-855012)
chr3 (245-281)||(6953291-6953327)
chr3 (245-281)||(6953430-6953466)
chr3 (245-281)||(6953812-6953848)
chr3 (245-281)||(18199352-18199388)
chr3 (245-281)||(36093873-36093909)
chr3 (245-281)||(36093964-36094000)
chr3 (245-281)||(36947725-36947761)
chr3 (245-281)||(36947864-36947900)
chr3 (245-281)||(36948003-36948039)
[»] chr7 (11 HSPs)
chr7 (1-251)||(22005714-22005964)
chr7 (2-251)||(7892490-7892739)
chr7 (1-252)||(3598990-3599241)
chr7 (20-113)||(13604170-13604262)
chr7 (245-281)||(3600149-3600185)
chr7 (245-281)||(5090967-5091003)
chr7 (245-281)||(7891382-7891418)
chr7 (245-281)||(13927440-13927476)
chr7 (245-281)||(22004323-22004359)
chr7 (245-281)||(22004514-22004550)
chr7 (245-281)||(22004605-22004641)
[»] chr5 (7 HSPs)
chr5 (1-251)||(32674006-32674256)
chr5 (55-251)||(22636691-22636891)
chr5 (20-113)||(21122329-21122422)
chr5 (245-281)||(20844506-20844542)
chr5 (245-281)||(23179540-23179576)
chr5 (245-281)||(23179631-23179667)
chr5 (245-281)||(32672891-32672927)
[»] chr2 (9 HSPs)
chr2 (1-251)||(13906996-13907246)
chr2 (1-251)||(26454641-26454891)
chr2 (2-251)||(40604478-40604727)
chr2 (245-281)||(32287325-32287361)
chr2 (245-281)||(13899908-13899944)
chr2 (245-281)||(13905806-13905842)
chr2 (245-281)||(26453534-26453570)
chr2 (245-281)||(35433139-35433175)
chr2 (245-281)||(40603369-40603405)
[»] chr6 (1 HSPs)
chr6 (1-251)||(3590335-3590585)
[»] chr1 (7 HSPs)
chr1 (1-251)||(35595690-35595940)
chr1 (2-251)||(2045990-2046239)
chr1 (245-281)||(2051974-2052010)
chr1 (245-281)||(39514207-39514243)
chr1 (245-281)||(45507254-45507290)
chr1 (245-281)||(45507403-45507439)
chr1 (245-281)||(49791612-49791648)
[»] scaffold0121 (3 HSPs)
scaffold0121 (245-281)||(41422-41458)
scaffold0121 (245-281)||(41240-41276)
scaffold0121 (245-281)||(41331-41367)
[»] scaffold0160 (1 HSPs)
scaffold0160 (245-281)||(36132-36168)


Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 14995220 - 14995470
Alignment:
Q  1 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgca 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14995220 gcaattcaaacagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgca 14995319  T
Q  101 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14995320 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 14995419  T
Q  201 tgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 251  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14995420 tgaatggaaagaaagatgtgtggttaaccttagtcacaaaaaagaggagga 14995470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 22732207 - 22732243
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  22732207 aggaggagtgaaattaggaaatcatggttagggtttg 22732243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 41860613 - 41860863
Alignment:
Q  1 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41860613 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgca 41860712  T
Q  101 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41860713 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 41860812  T
Q  201 tgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 251  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  41860813 tgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 41860863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 52681716 - 52681467
Alignment:
Q  2 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaa 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||    
T  52681716 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaattcctgaattgcaa 52681617  T
Q  102 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaatt 201  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  52681616 aatcaacaaactaaaccccacaccaattatataacaattactttgattttgtaagaagcctaaaaagctgttgcaagctattttgtacaatagaggaatt 52681517  T
Q  202 gaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 251  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  52681516 gaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 52681467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 30576573 - 30576688
Alignment:
Q  3 aattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaa 102  Q
    |||||||||| || ||| |||||||||||| ||||||| || |||||||| |||| | |||||||||||||| | | |||| ||||| ||  ||||||||    
T  30576573 aattcaaaaactcgtcgaattacaaataacaaaaaatccaattaaacaaaagctcttgctcttattccaaccgccattttggaaatttctctactgcaaa 30576672  T
Q  103 atcaacaaaccaaacc 118  Q
    || |||||||||||||    
T  30576673 atgaacaaaccaaacc 30576688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 94 - 248
Target Start/End: Complemental strand, 15057124 - 15056967
Alignment:
Q  94 aactgcaaaatcaacaaaccaaaccccacaccaatcatat----aacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtac 189  Q
    |||| ||||||||||| ||||||||  ||| |||||||||    ||||||||| ||||||||  |||||  |||| |||||||||||| |||||||| ||    
T  15057124 aactccaaaatcaacataccaaacct-acaacaatcatatgaacaacaattacgttgattttaaaagaaatctaagaagctattgcaatctattttgaac 15057026  T
Q  190 aatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagagga 248  Q
    || | |||||||||| |  || ||||||  |||||||| ||| ||||| ||||||||||    
T  15057025 aacaaaggaattgaaagagaataaagatacgtggttaaacttggtcacgaagaagagga 15056967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 115
Target Start/End: Original strand, 47964110 - 47964156
Alignment:
Q  69 ccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaa 115  Q
    |||||||| ||||||||||||| | ||||| ||||||||||||||||    
T  47964110 ccaacccctaatttgaaaattcataaactgtaaaatcaacaaaccaa 47964156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 41861939 - 41861975
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41861939 aggaggagggaaattaggaaatcatggttagggtttg 41861975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 41862030 - 41862066
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41862030 aggaggagggaaattaggaaatcatggttagggtttg 41862066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 41862121 - 41862157
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41862121 aggaggagggaaattaggaaatcatggttagggtttg 41862157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 41862212 - 41862248
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41862212 aggaggagggaaattaggaaatcatggttagggtttg 41862248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 41862403 - 41862439
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41862403 aggaggagggaaattaggaaatcatggttagggtttg 41862439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 41946638 - 41946674
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41946638 aggaggagggaaattaggaaatcatggttagggtttg 41946674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 41946729 - 41946765
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41946729 aggaggagggaaattaggaaatcatggttagggtttg 41946765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 52680395 - 52680359
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  52680395 aggaggagggaaattaggaaatcatggttagggtttg 52680359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 53285732 - 53285696
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  53285732 aggaggagtgaaattaggaaatcatggttagggtttg 53285696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 26950504 - 26950254
Alignment:
Q  1 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26950504 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgca 26950405  T
Q  101 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26950404 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 26950305  T
Q  201 tgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 251  Q
    |||||| ||||||||||||||||||||||||||||||| | ||||||||||    
T  26950304 tgaatgcaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 26950254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 36092543 - 36092793
Alignment:
Q  1 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgca 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36092543 gcaattcaaaaagtcatcagattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcatgaactgca 36092642  T
Q  101 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36092643 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 36092742  T
Q  201 tgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 251  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  36092743 tgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 36092793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 18200733 - 18200483
Alignment:
Q  1 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  18200733 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctattcttattccaaccccaaatttgaaaattcctgaactgca 18200634  T
Q  101 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18200633 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagtctaaaaagctattgcaagctattttgtacaatagaggaat 18200534  T
Q  201 tgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 251  Q
    |||||||| ||||||||||||||||||||||||||||| | ||||||||||    
T  18200533 tgaatggagagaaagatgtgtggttaaccttagtcacataaaagaggagga 18200483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 12807577 - 12807663
Alignment:
Q  27 aataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaacc 113  Q
    ||||||||||||||||| |||||||||| |  |||||||||   |||||| ||||||||||||| | ||||| ||||||||||||||    
T  12807577 aataaccaaaaatcaaattaaacaaatgttattactcttatcttaacccctaatttgaaaattcataaactgtaaaatcaacaaacc 12807663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 14458470 - 14458557
Alignment:
Q  20 gattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaa 107  Q
    |||||| ||| ||||||||| ||| ||||||||||||  |||||||||   ||| || ||||||||||||| | ||||| ||||||||    
T  14458470 gattacgaattaccaaaaataaaattaaacaaatgctattactcttatcttaactcctaatttgaaaattcataaactgtaaaatcaa 14458557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 855012 - 854976
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  855012 aggaggagggaaattaggaaatcatggttagggtttg 854976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 6953291 - 6953327
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  6953291 aggaggagggaaattaggaaatcatggttagggtttg 6953327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 6953430 - 6953466
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  6953430 aggaggagggaaattaggaaatcatggttagggtttg 6953466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 6953812 - 6953848
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  6953812 aggaggagggaaattaggaaatcatggttagggtttg 6953848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 18199388 - 18199352
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  18199388 aggaggagggaaattaggaaatcatggttagggtttg 18199352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 36093873 - 36093909
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36093873 aggaggagggaaattaggaaatcatggttagggtttg 36093909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 36093964 - 36094000
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36093964 aggaggagggaaattaggaaatcatggttagggtttg 36094000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 36947725 - 36947761
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36947725 aggaggagggaaattaggaaatcatggttagggtttg 36947761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 36947864 - 36947900
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36947864 aggaggagggaaattaggaaatcatggttagggtttg 36947900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 36948003 - 36948039
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36948003 aggaggagggaaattaggaaatcatggttagggtttg 36948039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 22005964 - 22005714
Alignment:
Q  1 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22005964 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttatttcaaccccgaatttgaaaattcctgaactgca 22005865  T
Q  101 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22005864 aaatcaaaaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 22005765  T
Q  201 tgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 251  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  22005764 tgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 22005714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 7892739 - 7892490
Alignment:
Q  2 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaa 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  7892739 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaattcctgaactgcaa 7892640  T
Q  102 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaatt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7892639 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctgttgcaagctattttgtacaatagaggaatt 7892540  T
Q  202 gaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 251  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  7892539 gaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 7892490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 3598990 - 3599241
Alignment:
Q  1 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgca 100  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  3598990 gcaattcaaaaagtcatcgaaatacaaataaccaaaaatcaaactaaacaaatgctcccactcttattccaaccccgaatttgaaaattcctgaactaca 3599089  T
Q  101 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3599090 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 3599189  T
Q  201 tgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggaggat 252  Q
    |||||| ||||||||||||||||||||||||||||||| | |||||||||||    
T  3599190 tgaatgtaaagaaagatgtgtggttaaccttagtcacagataagaggaggat 3599241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 13604170 - 13604262
Alignment:
Q  20 gattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaacc 113  Q
    |||||| ||||||||||||||||| |||||||||| |  |||||||||   |||||| ||||||||||||| | || || ||||||||||||||    
T  13604170 gattacgaataaccaaaaatcaaattaaacaaatgttattactcttatcttaacccctaatttgaaaattcat-aaatgtaaaatcaacaaacc 13604262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 3600149 - 3600185
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  3600149 aggaggagggaaattaggaaatcatggttagggtttg 3600185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 5091003 - 5090967
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  5091003 aggaggagtgaaattaggaaatcatggttagggtttg 5090967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 7891418 - 7891382
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  7891418 aggaggagggaaattaggaaatcatggttagggtttg 7891382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 13927476 - 13927440
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  13927476 aggaggagggaaattaggaaatcatggttagggtttg 13927440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 22004359 - 22004323
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  22004359 aggaggagggaaattaggaaatcatggttagggtttg 22004323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 22004550 - 22004514
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  22004550 aggaggagggaaattaggaaatcatggttagggtttg 22004514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 22004641 - 22004605
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  22004641 aggaggagggaaattaggaaatcatggttagggtttg 22004605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 32674256 - 32674006
Alignment:
Q  1 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32674256 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaattgca 32674157  T
Q  101 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32674156 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagttattttgtacaatagaggaat 32674057  T
Q  201 tgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 251  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  32674056 tgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 32674006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 55 - 251
Target Start/End: Original strand, 22636691 - 22636891
Alignment:
Q  55 ctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatat----aacaattactttgattt 150  Q
    ||||||||||| |||||||| | |||||||||| || | ||||||||||||||||||| ||||||||||||||||||||    |||||||||||||||||    
T  22636691 ctcctactctttttccaaccaccaatttgaaaactcataaactgcaaaatcaacaaacaaaaccccacaccaatcatatgaacaacaattactttgattt 22636790  T
Q  151 tgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagg 250  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||| || ||||||||||||||||  |||||||||||    
T  22636791 tgtaagaagcctaaaaagctattgcaagctattttgaacaaaagaggaattgaacggaaagaaagatatgcggttaaccttagtcacggagaagaggagg 22636890  T
Q  251 a 251  Q
    |    
T  22636891 a 22636891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 21122422 - 21122329
Alignment:
Q  20 gattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaacc 113  Q
    |||||| ||||||||||||| ||| ||||||||||||  |||||||||   |||||| ||||| ||||||| |  || | ||||||||||||||    
T  21122422 gattacgaataaccaaaaataaaattaaacaaatgctattactcttatcttaacccctaatttaaaaattcatagaccgtaaaatcaacaaacc 21122329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 20844542 - 20844506
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  20844542 aggaggagggaaattaggaaatcatggttagggtttg 20844506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 23179576 - 23179540
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  23179576 aggaggagggaaattaggaaatcatggttagggtttg 23179540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 23179667 - 23179631
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  23179667 aggaggagggaaattaggaaatcatggttagggtttg 23179631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 32672927 - 32672891
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  32672927 aggaggagggaaattaggaaatcatggttagggtttg 32672891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 13907246 - 13906996
Alignment:
Q  1 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13907246 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttatttcaaccccgaatttgaaaattcctgaactgca 13907147  T
Q  101 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13907146 aaatcaaaaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 13907047  T
Q  201 tgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 251  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  13907046 tgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 13906996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 26454891 - 26454641
Alignment:
Q  1 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  26454891 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaattcctgaactgca 26454792  T
Q  101 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26454791 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctgttgcaagctattttgtacaatagaggaat 26454692  T
Q  201 tgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 251  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  26454691 tgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 26454641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 40604727 - 40604478
Alignment:
Q  2 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaa 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||    
T  40604727 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaatttctgaactgcaa 40604628  T
Q  102 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaatt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  40604627 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagttgttgcaagctattttgtacaatagaggaatt 40604528  T
Q  202 gaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 251  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  40604527 gaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 40604478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 32287361 - 32287325
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||| ||||||||||||||||||||||||||||    
T  32287361 aggaggatggaaattaggaaatcatggttagggtttg 32287325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 13899944 - 13899908
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  13899944 aggaggagggaaattaggaaatcatggttagggtttg 13899908  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 13905842 - 13905806
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  13905842 aggaggagggaaattaggaaatcatggttagggtttg 13905806  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 26453570 - 26453534
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  26453570 aggaggagggaaattaggaaatcatggttagggtttg 26453534  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 35433139 - 35433175
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  35433139 aggaggagggaaattaggaaatcatggttagggtttg 35433175  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 40603405 - 40603369
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  40603405 aggaggagggaaattaggaaatcatggttagggtttg 40603369  T

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Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 3590585 - 3590335
Alignment:
Q  1 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3590585 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattgctgaactgca 3590486  T
Q  101 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3590485 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagtctaaaaagctattgcaagctattttgtacaatagaggaat 3590386  T
Q  201 tgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 251  Q
    ||||| || ||||||||||||||||||||||||||||| | ||||||||||    
T  3590385 tgaatagagagaaagatgtgtggttaaccttagtcacataaaagaggagga 3590335  T

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Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 35595690 - 35595940
Alignment:
Q  1 gcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgca 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  35595690 gcaattcaaaaagtcaacggattacaaataaccaaaaatcaaactaaacaaatgctcccactcttattccaaccccgaatttgaaaattcctgaactgca 35595789  T
Q  101 aaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 200  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35595790 aaatcaacaaaccaaatcccacaccaatcatataacaattattttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaat 35595889  T
Q  201 tgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 251  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  35595890 tgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 35595940  T

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Target: chr1; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 2045990 - 2046239
Alignment:
Q  2 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaa 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  2045990 caattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaataaatgctcatactcttatttcaaccccgaatttgaaaattcctgaactgcaa 2046089  T
Q  102 aatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaatt 201  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2046090 aataaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctgttgcaagctattttgtacaatagaggaatt 2046189  T
Q  202 gaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 251  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  2046190 gaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 2046239  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 2051974 - 2052010
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  2051974 aggaggagggaaattaggaaatcatggttagggtttg 2052010  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 39514207 - 39514243
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  39514207 aggaggagggaaattaggaaatcatggttagggtttg 39514243  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 45507254 - 45507290
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  45507254 aggaggagggaaattaggaaatcatggttagggtttg 45507290  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 45507403 - 45507439
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  45507403 aggaggagggaaattaggaaatcatggttagggtttg 45507439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 49791612 - 49791648
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  49791612 aggaggagggaaattaggaaatcatggttagggtttg 49791648  T

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Target: scaffold0121 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 41458 - 41422
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||| ||||||||||||||||||||||||||||    
T  41458 aggaggatggaaattaggaaatcatggttagggtttg 41422  T

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Target: scaffold0121; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 41276 - 41240
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41276 aggaggagggaaattaggaaatcatggttagggtttg 41240  T

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Target: scaffold0121; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 41367 - 41331
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41367 aggaggagggaaattaggaaatcatggttagggtttg 41331  T

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Target: scaffold0160 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 36168 - 36132
Alignment:
Q  245 aggaggatagaaattaggaaatcatggttagggtttg 281  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36168 aggaggagggaaattaggaaatcatggttagggtttg 36132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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