View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11213_high_1 (Length: 211)
Name: NF11213_high_1
Description: NF11213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11213_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 64 - 196
Target Start/End: Original strand, 18605470 - 18605602
Alignment:
| Q |
64 |
ggggtgaaacggcaaactctatcaaaagagcactaaagaagatgatggattaaggtccattgttctagtacatcttcacattcttaaaaaataaatataa |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18605470 |
ggggtgaaacggcaaactctatcaaaagagaactaaagaagatgatggattaaggtccattgttctagtacatcttcacattcttaaaaaataaatataa |
18605569 |
T |
|
| Q |
164 |
ttaccatttatttcggtgtaggattgagaaatt |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
18605570 |
ttaccatttatttcggtgtaggattgagaaatt |
18605602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 18605388 - 18605459
Alignment:
| Q |
19 |
gaatagaggaagcaagctcggtcatgggaagtttcccaagaaacaggggtgaaacggcaaactctatcaaaa |
90 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18605388 |
gaatagaggaagcaagctcggtcatgggaagtttcccaagaaacaggggtgaaatggcaaactctatcaaaa |
18605459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University