View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11214_high_2 (Length: 766)

Name: NF11214_high_2
Description: NF11214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11214_high_2
NF11214_high_2
[»] chr2 (11 HSPs)
chr2 (24-290)||(35887335-35887610)
chr2 (263-505)||(35918943-35919197)
chr2 (252-323)||(35542304-35542375)
chr2 (252-323)||(35559642-35559713)
chr2 (637-752)||(35919310-35919425)
chr2 (30-78)||(34690058-34690106)
chr2 (30-78)||(34712470-34712518)
chr2 (21-77)||(35554550-35554606)
chr2 (21-77)||(35889733-35889789)
chr2 (364-403)||(35890486-35890525)
chr2 (364-468)||(34989810-34989918)
[»] chr5 (1 HSPs)
chr5 (398-494)||(19533436-19533529)


Alignment Details
Target: chr2 (Bit Score: 162; Significance: 5e-86; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 24 - 290
Target Start/End: Original strand, 35887335 - 35887610
Alignment:
Q  24 aaaagatgatcagttccactactgatcagaaagatgatgtagcaatgaatgaggccggttgtgcaaaagtggaggaggatcgtaagaacaaggcagccgg 123  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||| | | || | |||||| |||||||||||| ||||||||||||||  |     
T  35887335 aaaagatgatcagttccactgctgatcagaaagatgatttagcaatgaatgaagtcagtggcgcaaaaatggaggaggatcataagaacaaggcagaagc 35887434  T
Q  124 aaagatgatcagttctacttctgatcat---cagaaagagggtggtgatgacgatgtagggatgaatgcaggcagcaccagtagtgattcttcaacattg 220  Q
    ||||||||||||||| ||| ||||||||   |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  35887435 aaagatgatcagttcaactactgatcatgatcagaaagagggtggtgatgacgatgtagcgatgaatgaaggcagcaccagtagtgattcttcaacattg 35887534  T
Q  221 ccatcaaagaagagaa---aaggac---ctgaaactgaaacaacttctgcagaaacttcttccaagaaaagaaaag 290  Q
    ||||| ||||||||||   ||||||   ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35887535 ccatccaagaagagaaaagaaggaccttctgaaactgaaacaacttctgaagaaacttcttccaagaaaagaaaag 35887610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 263 - 505
Target Start/End: Original strand, 35918943 - 35919197
Alignment:
Q  263 gcagaaacttcttccaagaaaagaaaagaacaccctcctggttccgttgagggaagattca---------tactcaatttagatgttggtcaggta---t 350  Q
    ||||||||||||||||||||||||||||  |||||||||||||||| || ||||| |||||         || | |||||  ||| ||||||||||   |    
T  35918943 gcagaaacttcttccaagaaaagaaaagggcaccctcctggttccggtgggggaacattcacccctcatataatgaatttgaatgctggtcaggtagtat 35919042  T
Q  351 aacaataattaagcaatgttcacatttcatatacaattttatatttcattaattaaataaatggtttttgaattaatatttgttttgcaggatttaatgg 450  Q
    |||  ||||||| |||| ||| |||| ||||| ||||||||||||||||| |||||||| ||||||||| |||||||  |||||||| |||||||  |||    
T  35919043 aactttaattaaccaatcttcgcattccatatgcaattttatatttcatttattaaatatatggttttttaattaattattgttttgtaggatttggtgg 35919142  T
Q  451 atgctatatttgaactat-tgaaggcatatcctcgtcaatctgttatcataaattc 505  Q
    | |||||||   | |||| |||| ||||  ||||||| ||||||||||||||||||    
T  35919143 acgctatatacaatctatctgaa-gcattacctcgtcgatctgttatcataaattc 35919197  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 252 - 323
Target Start/End: Complemental strand, 35542375 - 35542304
Alignment:
Q  252 aaacaacttctgcagaaacttcttccaagaaaagaaaagaacaccctcctggttccgttgagggaagattca 323  Q
    |||| ||||||||||||||||||||| |||||||||||| || |||||||||||||| || |||||||||||    
T  35542375 aaactacttctgcagaaacttcttcccagaaaagaaaaggacgccctcctggttccggtgggggaagattca 35542304  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 252 - 323
Target Start/End: Complemental strand, 35559713 - 35559642
Alignment:
Q  252 aaacaacttctgcagaaacttcttccaagaaaagaaaagaacaccctcctggttccgttgagggaagattca 323  Q
    |||| ||||||||||||||||||||| |||||||||||| || |||||||||||||| || |||||||||||    
T  35559713 aaactacttctgcagaaacttcttcccagaaaagaaaaggacgccctcctggttccggtgggggaagattca 35559642  T

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Target: chr2; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 637 - 752
Target Start/End: Original strand, 35919310 - 35919425
Alignment:
Q  637 tgtaaagctcttaatttttctctgatatcctataatgtgagcgcgtgcatgcatgcagggagaatttcgcataatttctttatctgtaaaatgtctcgtt 736  Q
    ||||||||  ||||||||||||| ||||| |||||| || |||||||  ||| |||||| | ||||||  |||||| ||||| ||||||  |||||||||    
T  35919310 tgtaaagcaattaatttttctcttatatcttataatttgtgcgcgtgtttgcttgcaggtaaaatttcagataattactttagctgtaatctgtctcgtt 35919409  T
Q  737 gatgatgatggtcgtc 752  Q
    ||||||||||||||||    
T  35919410 gatgatgatggtcgtc 35919425  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 34690106 - 34690058
Alignment:
Q  30 tgatcagttccactactgatcagaaagatgatgtagcaatgaatgaggc 78  Q
    ||||||||||||  ||||||||||||||||||||||||||||| |||||    
T  34690106 tgatcagttccataactgatcagaaagatgatgtagcaatgaaagaggc 34690058  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 34712518 - 34712470
Alignment:
Q  30 tgatcagttccactactgatcagaaagatgatgtagcaatgaatgaggc 78  Q
    ||||||||||||  ||||||||||||||||||||||||||||| |||||    
T  34712518 tgatcagttccataactgatcagaaagatgatgtagcaatgaaagaggc 34712470  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 35554606 - 35554550
Alignment:
Q  21 cacaaaagatgatcagttccactactgatcagaaagatgatgtagcaatgaatgagg 77  Q
    |||||||||||||  |||| || ||||||||||||||||||| ||||||||||||||    
T  35554606 cacaaaagatgattggttctacgactgatcagaaagatgatgcagcaatgaatgagg 35554550  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 35889733 - 35889789
Alignment:
Q  21 cacaaaagatgatcagttccactactgatcagaaagatgatgtagcaatgaatgagg 77  Q
    |||||||||||||| |||| || ||||||||||||||||||| ||||||||| ||||    
T  35889733 cacaaaagatgatcggttctacgactgatcagaaagatgatgcagcaatgaacgagg 35889789  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 364 - 403
Target Start/End: Original strand, 35890486 - 35890525
Alignment:
Q  364 caatgttcacatttcatatacaattttatatttcattaat 403  Q
    |||| |||||||||||||| ||||||||||||||||||||    
T  35890486 caatcttcacatttcatatgcaattttatatttcattaat 35890525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 364 - 468
Target Start/End: Original strand, 34989810 - 34989918
Alignment:
Q  364 caatgttcacatttcatatacaattttatatttcattaattaaa---taaatggtttttgaattaa-tatttgttttgcaggatttaatggatgctatat 459  Q
    |||| ||||| |||||||| ||||||||||||||||| ||||||   || ||||||||  |||||| || || |||||||||||||  |||||||| |||    
T  34989810 caatcttcacttttcatatgcaattttatatttcattcattaaatattatatggttttgcaattaattaattattttgcaggatttggtggatgctgtat 34989909  T
Q  460 ttgaactat 468  Q
     | ||||||    
T  34989910 atcaactat 34989918  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 398 - 494
Target Start/End: Complemental strand, 19533529 - 19533436
Alignment:
Q  398 attaattaaataaatggtttttgaattaatatttgttttgcaggatttaatggatgctatatttgaactattgaaggcatatcctcgtcaatctgtt 494  Q
    |||||||||||| |||||||| ||||||||   | ||||||||||||| ||| |  |||||| ||||||||  ||||||| || ||||| |||||||    
T  19533529 attaattaaatatatggttttggaattaat---tcttttgcaggatttgatgaactctatatatgaactatctaaggcatctcatcgtcgatctgtt 19533436  T

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