View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11214_high_5 (Length: 610)
Name: NF11214_high_5
Description: NF11214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11214_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 552; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 1 - 592
Target Start/End: Complemental strand, 4665312 - 4664721
Alignment:
| Q |
1 |
tttttgtttgctgaattagagactaaattaagatcaaatttttctcgtgaaacactttggtagctttaagcaagttttgacgtcaaattttctttggtag |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4665312 |
tttttgtttgctgtattagagactaaattaagatcaaatttttttcgtgaaacactttggtagctttaagcaagttttgacgtcaaattttttttggtag |
4665213 |
T |
|
| Q |
101 |
cttttaacaagttatacaaatcattcctgaaaaagaagtgataccatataattttgcattgtcatattgaataggaacgggaaaagaaagacaaaagaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4665212 |
cttttaacaagttatacaaatcattcctgaaaaagaagtgataccatataattttgcattgccatattgaataggaacgggaaaagaaagacaaaagaaa |
4665113 |
T |
|
| Q |
201 |
tatgacgagatttagtaatcaaatggtgtaaaataagtttgtgcataatacagtaccggtttgtttatacacattagataaaaccatggaaataaactaa |
300 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
4665112 |
tatgacgagattaagtaatcaaatggtgtaaaataagtttgtgcataatacagtaccggtttgtttatacacattagataaagccatgaaaataaactaa |
4665013 |
T |
|
| Q |
301 |
ccatattgtcttggtgaatggaagaaacgcattgctgcaccaaaatagtcagcatacattattcttgcatgaggattcttcgtccttagtgtctgtaagg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4665012 |
ccatattgtcttggtgaatggaagaaacgcattgctgcaccaaaatagtcagcatacattattcttgcatgaggattcttggtccttagtgtctgtaagg |
4664913 |
T |
|
| Q |
401 |
caaaattgagctgcatgttgtggtaatttgctaaaccattgaaagcttttaaacatccattttcatcatagtccgatatgttcttgctactaaacaaagt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4664912 |
caaaattgagctgcatgttgtggtaatttgctaaaccattgaaagcttttaaacatccattttcatcatagtctgatatgttcttgctactaaacaaagt |
4664813 |
T |
|
| Q |
501 |
taggtacacagcactgcatccaacaggcaaatttcccggcaccaaaagctccactgctccttcagcaatcaattcctagccaataattaatt |
592 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4664812 |
taggtacacagcattgcatccaacaggcaaatttcccggcaccaaaagctccactgctccttcagcaatcaattcctagccaataattaatt |
4664721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 263 - 592
Target Start/End: Complemental strand, 4668218 - 4667889
Alignment:
| Q |
263 |
gtttatacacattagataaaaccatggaaataaactaaccatattgtcttggtgaatggaagaaacgcattgctgcaccaaaatagtcagcatacattat |
362 |
Q |
| |
|
|||||| ||||||||| ||| ||| ||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4668218 |
gtttatgcacattagacaaagccacggaaataaactaaccgtagtgtcttggtgaatggaagaaacgctttgctgcaccaaaatagtcagcatacattat |
4668119 |
T |
|
| Q |
363 |
tcttgcatgaggattcttcgtccttagtgtctgtaaggcaaaattgagctgcatgttgtggtaatttgctaaaccattgaaagcttttaaacatccattt |
462 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
4668118 |
tcttgcatgaggattcttcttccttagtgtctgtaaggcaatattgagctgcatgttgtggttctttgctaaatcattgaaagattttaaacatccattt |
4668019 |
T |
|
| Q |
463 |
tcatcatagtccgatatgttcttgctactaaacaaagttaggtacacagcactgcatccaacaggcaaatttcccggcaccaaaagctccactgctcctt |
562 |
Q |
| |
|
|||||||||||| |||||||||||| |||||| |||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4668018 |
tcatcatagtcctttatgttcttgctgctaaacgaagttaggtacacaacagagcatccaacaggcaaatttcctggcaccaaaagctccactgctcctt |
4667919 |
T |
|
| Q |
563 |
cagcaatcaattcctagccaataattaatt |
592 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |
|
|
| T |
4667918 |
cagcgatcaattcctagccaataattaatt |
4667889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University