View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11214_high_8 (Length: 462)

Name: NF11214_high_8
Description: NF11214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11214_high_8
NF11214_high_8
[»] scaffold0005 (1 HSPs)
scaffold0005 (20-448)||(54449-54866)
[»] chr4 (17 HSPs)
chr4 (20-448)||(14784864-14785281)
chr4 (150-257)||(4698636-4698743)
chr4 (148-238)||(31240889-31240979)
chr4 (153-262)||(4698646-4698755)
chr4 (153-289)||(55292108-55292244)
chr4 (153-287)||(19485588-19485722)
chr4 (153-286)||(38687910-38688043)
chr4 (153-288)||(4758774-4758909)
chr4 (153-243)||(18135355-18135445)
chr4 (153-255)||(31854409-31854511)
chr4 (153-250)||(52535986-52536083)
chr4 (153-288)||(36099503-36099638)
chr4 (153-255)||(2385225-2385327)
chr4 (153-243)||(2411882-2411972)
chr4 (153-243)||(18430297-18430387)
chr4 (153-255)||(31227287-31227389)
chr4 (147-255)||(56216244-56216352)
[»] chr7 (8 HSPs)
chr7 (150-271)||(26563934-26564055)
chr7 (153-289)||(7107646-7107782)
chr7 (153-288)||(12763245-12763380)
chr7 (153-250)||(7463465-7463562)
chr7 (153-289)||(41850592-41850728)
chr7 (147-255)||(46449808-46449916)
chr7 (153-250)||(26563956-26564053)
chr7 (153-290)||(30866261-30866398)
[»] chr3 (21 HSPs)
chr3 (20-117)||(13415321-13415418)
chr3 (153-288)||(8243679-8243814)
chr3 (153-287)||(10049684-10049818)
chr3 (139-292)||(23825151-23825304)
chr3 (153-257)||(22003812-22003916)
chr3 (153-257)||(22011329-22011433)
chr3 (153-255)||(6086931-6087033)
chr3 (153-255)||(25846541-25846643)
chr3 (153-255)||(52114054-52114156)
chr3 (153-288)||(8243698-8243833)
chr3 (153-292)||(9465064-9465203)
chr3 (153-288)||(26999037-26999172)
chr3 (151-250)||(55139187-55139286)
chr3 (153-255)||(335405-335507)
chr3 (153-255)||(14768114-14768216)
chr3 (153-287)||(18765256-18765390)
chr3 (153-294)||(9440144-9440285)
chr3 (153-258)||(44593217-44593322)
chr3 (153-262)||(55139196-55139305)
chr3 (153-257)||(28564963-28565067)
chr3 (153-257)||(29019751-29019855)
[»] chr8 (9 HSPs)
chr8 (172-261)||(24255895-24255984)
chr8 (153-293)||(2229062-2229202)
chr8 (153-287)||(41915610-41915744)
chr8 (154-255)||(8242240-8242341)
chr8 (163-288)||(43135070-43135195)
chr8 (153-244)||(22781898-22781989)
chr8 (153-255)||(2339306-2339408)
chr8 (153-277)||(33642474-33642598)
chr8 (153-245)||(34028399-34028491)
[»] chr2 (14 HSPs)
chr2 (155-251)||(22857822-22857918)
chr2 (153-288)||(44737280-44737414)
chr2 (139-255)||(45065610-45065726)
chr2 (153-290)||(7765789-7765926)
chr2 (150-262)||(22857827-22857938)
chr2 (153-255)||(16241297-16241399)
chr2 (217-274)||(27182086-27182143)
chr2 (217-274)||(27831628-27831685)
chr2 (153-257)||(20427017-20427121)
chr2 (153-255)||(42263500-42263602)
chr2 (163-289)||(42341644-42341770)
chr2 (153-255)||(43657955-43658057)
chr2 (153-250)||(38598472-38598569)
chr2 (153-257)||(11711352-11711456)
[»] chr1 (9 HSPs)
chr1 (153-277)||(33325349-33325473)
chr1 (153-287)||(10065253-10065387)
chr1 (153-286)||(28989288-28989421)
chr1 (153-255)||(14281606-14281708)
chr1 (153-257)||(23398096-23398200)
chr1 (153-287)||(9548688-9548822)
chr1 (153-243)||(29312455-29312545)
chr1 (153-243)||(38830499-38830589)
chr1 (153-257)||(40161201-40161305)
[»] chr6 (7 HSPs)
chr6 (153-288)||(7405460-7405595)
chr6 (153-245)||(6045721-6045813)
chr6 (153-288)||(31971027-31971162)
chr6 (153-255)||(390835-390937)
chr6 (153-250)||(6047831-6047928)
chr6 (153-250)||(6801586-6801683)
chr6 (153-257)||(30686560-30686664)
[»] chr5 (17 HSPs)
chr5 (153-292)||(29374186-29374325)
chr5 (148-243)||(38393797-38393892)
chr5 (153-255)||(6910728-6910830)
chr5 (153-255)||(7749934-7750036)
chr5 (153-255)||(9601623-9601725)
chr5 (153-255)||(37699810-37699912)
chr5 (153-250)||(7945853-7945950)
chr5 (153-289)||(25027710-25027846)
chr5 (153-288)||(13144896-13145031)
chr5 (153-288)||(23411181-23411316)
chr5 (153-255)||(31802988-31803090)
chr5 (153-255)||(41989580-41989682)
chr5 (153-257)||(2959267-2959371)
chr5 (153-257)||(2967736-2967840)
chr5 (148-276)||(14338824-14338952)
chr5 (153-289)||(26898207-26898343)
chr5 (153-277)||(42311818-42311942)
[»] scaffold0123 (1 HSPs)
scaffold0123 (153-255)||(29260-29362)
[»] scaffold0002 (1 HSPs)
scaffold0002 (153-255)||(492335-492437)


Alignment Details
Target: scaffold0005 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 20 - 448
Target Start/End: Original strand, 54449 - 54866
Alignment:
Q  20 agttggtggtactctctccaatgctggtgttagtggacaagcatttaagcatggtcctcagatcagtaatgttcaacagcttgagattgttacaggtttg 119  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  54449 agttggtggtactctgtccaatgctggtgttagtggacaagcatttaagcatggtcctcagatcagtaatgttcagcagcttgagattgttacaggtttg 54548  T
Q  120 tatataatcttcttttgaatccctacaattctttttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttatacc 219  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||  || |||||||||||||    
T  54549 tatataatcttcttttgaatccctacgattctttttacaagaaacaatttattttttaaatacattgaataaattatgtatccaatttagattttatacc 54648  T
Q  220 agatacttaaattattcaatgtatctgaaaattcaattatttccagtaaataagaccgtaggaagtattttttaagtttcttttacggaaaaaatttagt 319  Q
    | ||||||||||||||||||||||||||||| |||||||||||| ||||||| || || ||||||||||||||||||||||||||| ||||||||||||     
T  54649 atatacttaaattattcaatgtatctgaaaagtcaattatttcctgtaaataggatcggaggaagtattttttaagtttcttttacagaaaaaatttag- 54747  T
Q  320 acgtgaattatgttagttttcaatgtttgaatcttcagaattctctctgatggcccttaactcaccgcaatcgatttgtttgcttaaaactattactcca 419  Q
            |||| ||||||| |||||||||||||| |||||||||||||||| ||||||||||||  ||| || |||||||| || |||||||||||||     
T  54748 --------tatggtagtttttaatgtttgaatctttagaattctctctgatgtcccttaactcac--caaacgctttgtttgttttaaactattactccc 54837  T
Q  420 tccatcccaaattaagtgagttatttgtt 448  Q
    ||  ||| |||||||||||| ||||||||    
T  54838 tcggtcctaaattaagtgagctatttgtt 54866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 20 - 448
Target Start/End: Complemental strand, 14785281 - 14784864
Alignment:
Q  20 agttggtggtactctctccaatgctggtgttagtggacaagcatttaagcatggtcctcagatcagtaatgttcaacagcttgagattgttacaggtttg 119  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  14785281 agttggtggtactctgtccaatgctggtgttagtggacaagcatttaagcatggtcctcagatcagtaatgttcagcagcttgagattgttacaggtttg 14785182  T
Q  120 tatataatcttcttttgaatccctacaattctttttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttatacc 219  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||  || |||||||||||||    
T  14785181 tatataatcttcttttgaatccctacgattctttttacaagaaacaatttattttttaaatacattgaataaattatgtatccaatttagattttatacc 14785082  T
Q  220 agatacttaaattattcaatgtatctgaaaattcaattatttccagtaaataagaccgtaggaagtattttttaagtttcttttacggaaaaaatttagt 319  Q
    | ||||||||||||||||||||||||||||| |||||||||||| ||||||| || || ||||||||||||||||||||||||||| ||||||||||||     
T  14785081 atatacttaaattattcaatgtatctgaaaagtcaattatttcctgtaaataggatcggaggaagtattttttaagtttcttttacagaaaaaatttag- 14784983  T
Q  320 acgtgaattatgttagttttcaatgtttgaatcttcagaattctctctgatggcccttaactcaccgcaatcgatttgtttgcttaaaactattactcca 419  Q
            |||| ||||||| |||||||||||||| |||||||||||||||| ||||||||||||  ||| || |||||||| || |||||||||||||     
T  14784982 --------tatggtagtttttaatgtttgaatctttagaattctctctgatgtcccttaactcac--caaacgctttgtttgttttaaactattactccc 14784893  T
Q  420 tccatcccaaattaagtgagttatttgtt 448  Q
    ||  ||| |||||||||||| ||||||||    
T  14784892 tcggtcctaaattaagtgagctatttgtt 14784864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 150 - 257
Target Start/End: Original strand, 4698636 - 4698743
Alignment:
Q  150 ctttttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaa 249  Q
    ||||||||||||||||||| | |||||| |||||||||| || ||||||||||| | |||||| || |||| |||| ||||||||||||||||||| |||    
T  4698636 ctttttacaagaaacaattgaatttttagatacattgaataatttatgtatctggtttagattctagaccatatacataaattattcaatgtatctaaaa 4698735  T
Q  250 attcaatt 257  Q
    | ||||||    
T  4698736 aatcaatt 4698743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 148 - 238
Target Start/End: Complemental strand, 31240979 - 31240889
Alignment:
Q  148 ttctttttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaa 238  Q
    ||||||||||||||||||||| | ||||||||||||||||| ||||||||||| |  | ||||||||| ||||||||| ||||||||||||    
T  31240979 ttctttttacaagaaacaattaactttttaaatacattgaataaattatgtatttagtttagattttaaaccagatacataaattattcaa 31240889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 153 - 262
Target Start/End: Complemental strand, 4698755 - 4698646
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||| |||||||| | |||||| |||||||||| || |||||||| || | |||| | || ||||||||| ||||||||||||||||||| ||||||    
T  4698755 tttacaataaacaattgattttttagatacattgaataatttatgtatatggtctagaatctaaaccagatacataaattattcaatgtatctaaaaatt 4698656  T
Q  253 caattatttc 262  Q
    ||||| ||||    
T  4698655 caattgtttc 4698646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 153 - 289
Target Start/End: Complemental strand, 55292244 - 55292108
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    |||||||||||||||||| |||||| ||||||| || || |||||||| |||| ||| || |  || |||||  || |||||||||||||||| |||| |    
T  55292244 tttacaagaaacaatttattttttagatacattaaataatttatgtatttgatttaggttctcgactagatatatacattattcaatgtatctaaaaagt 55292145  T
Q  253 caattatttccagtaaataagaccgtaggaagtattt 289  Q
    ||| | | ||  ||||||| ||||| |||||||||||    
T  55292144 caaatttctcttgtaaataggaccggaggaagtattt 55292108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 153 - 287
Target Start/End: Original strand, 19485588 - 19485722
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    |||||||||||||||||| |||||||||||||| || || |||||||| || | ||| || |  |  |||||| || |||||||||||||||| |||| |    
T  19485588 tttacaagaaacaatttactttttaaatacattaaataatttatgtatttggtttaggttcttgattagatacatacattattcaatgtatctaaaaaat 19485687  T
Q  253 caattatttccagtaaataagaccgtaggaagtat 287  Q
    ||||| | ||  ||||||| ||||| ||| |||||    
T  19485688 caattttctcttgtaaataggaccggagggagtat 19485722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 286
Target Start/End: Complemental strand, 38688043 - 38687910
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    |||||||||||||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  38688043 tttacaagaaacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactagatacgtacattattcaatgtatctaaaaagt 38687944  T
Q  253 caattatttccagtaaataagaccgtaggaagta 286  Q
    ||| | | ||  ||||||||||||| ||| ||||    
T  38687943 caactttctcttgtaaataagaccggagggagta 38687910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 288
Target Start/End: Complemental strand, 4758909 - 4758774
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||||| |||||| ||||||| || || |||||||| |||| ||| || |  || |||||| || |||||||||||||||| |||| |    
T  4758909 tttacaagagacaatttactttttagatacattaaataatttatgtatttgatttaggttcttaactagatacatacattattcaatgtatctaaaaagt 4758810  T
Q  253 caattatttccagtaaataagaccgtaggaagtatt 288  Q
    ||| | | ||  ||||||| ||||| ||| ||||||    
T  4758809 caactgtctcttgtaaataggaccggagggagtatt 4758774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 243
Target Start/End: Complemental strand, 18135445 - 18135355
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtat 243  Q
    ||||||||| |||||||| |||||| |||||||||| || |||||||| |||| ||| || |  || |||||| || ||||||||||||||    
T  18135445 tttacaagagacaatttactttttagatacattgaataatttatgtatttgatttaggttcttgactagatacatacattattcaatgtat 18135355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 31854511 - 31854409
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    |||||||||||||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  31854511 tttacaagaaacaatttactttttagatacattaaataatttatgtatttggtttaggttattgactagatacatacattattcaatgtatctaaaaagt 31854412  T
Q  253 caa 255  Q
    |||    
T  31854411 caa 31854409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 153 - 250
Target Start/End: Complemental strand, 52536083 - 52535986
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaa 250  Q
    ||||||||| |||||| | |||||| ||||||| || || |||||||| |||| ||| ||||  || |||||| || |||||||||||||||| ||||    
T  52536083 tttacaagatacaattaactttttatatacattaaataatttatgtatttgatttaggtttttaactagatacatacattattcaatgtatctaaaaa 52535986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 288
Target Start/End: Original strand, 36099503 - 36099638
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  36099503 tttacaagagacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaaat 36099602  T
Q  253 caattatttccagtaaataagaccgtaggaagtatt 288  Q
    ||| | | ||  ||||||| ||||| ||| ||||||    
T  36099603 caactgtctcttgtaaataggaccggagggagtatt 36099638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 2385327 - 2385225
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||||| |||||| ||||||| || || |||||||| |  | |||||| |  || |||||| || |||||||||||||||| |||| |    
T  2385327 tttacaagagacaatttaatttttagatacattaaataatttatgtattttgtttagattcttgactagatacatacattattcaatgtatctaaaaagt 2385228  T
Q  253 caa 255  Q
    |||    
T  2385227 caa 2385225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 243
Target Start/End: Complemental strand, 2411972 - 2411882
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtat 243  Q
    |||||||||||||||||| |||||| ||||||| || || |||||||| |  | |||||| |  || |||||| || ||||||||||||||    
T  2411972 tttacaagaaacaatttactttttagatacattaaataatttatgtatttagtttagattcttgactagatacatacattattcaatgtat 2411882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 243
Target Start/End: Complemental strand, 18430387 - 18430297
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtat 243  Q
    ||||||||| |||||||| |||||| ||||||| || || |||||||| |||| ||| || |  || |||||| || ||||||||||||||    
T  18430387 tttacaagagacaatttactttttagatacattaaataatttatgtatttgatttaggttcttgactagatacatacattattcaatgtat 18430297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 255
Target Start/End: Original strand, 31227287 - 31227389
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    |||||||||||||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||| ||||||||| |||| |    
T  31227287 tttacaagaaacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactagatacatacattatttaatgtatctaaaaagt 31227386  T
Q  253 caa 255  Q
    |||    
T  31227387 caa 31227389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 255
Target Start/End: Original strand, 56216244 - 56216352
Alignment:
Q  147 attctttttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctg 246  Q
    ||||| ||||||||| |||||||| |||||| ||||||| || || |||||||| || | | |||| |  || | |||| || ||||||||||||||||     
T  56216244 attctatttacaagagacaatttactttttagatacattaaataatttatgtatttggtttggattcttaactaaatacatacattattcaatgtatcta 56216343  T
Q  247 aaaattcaa 255  Q
    |||| ||||    
T  56216344 aaaagtcaa 56216352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 150 - 271
Target Start/End: Original strand, 26563934 - 26564055
Alignment:
Q  150 ctttttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaa 249  Q
    ||||||||||||| ||||| | |||||| ||| |||||| ||||||||||| || | |||||| || ||||||||| |||||||||||||||||||||||    
T  26563934 ctttttacaagaagcaattaactttttagatatattgaataaattatgtatttggtttagattctagaccagatacgtaaattattcaatgtatctgaaa 26564033  T
Q  250 attcaattatttccagtaaata 271  Q
    | |||||| ||||  |||||||    
T  26564034 agtcaattgtttcttgtaaata 26564055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 153 - 289
Target Start/End: Original strand, 7107646 - 7107782
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||| | |||||| ||||||| || || |||||||| || | ||||||||  || |||||| ||||||||||||||||||| |||| |    
T  7107646 tttacaagagacaattaattttttagatacattaaataatttatgtatttggtttagatttttgactagatacataaattattcaatgtatctaaaaagt 7107745  T
Q  253 caattatttccagtaaataagaccgtaggaagtattt 289  Q
    ||| | | ||  ||||||| ||||| ||| |||||||    
T  7107746 caactttctcttgtaaataggaccggaggtagtattt 7107782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 288
Target Start/End: Original strand, 12763245 - 12763380
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  12763245 tttacaagagacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagt 12763344  T
Q  253 caattatttccagtaaataagaccgtaggaagtatt 288  Q
    ||||| | ||  ||||||||||||| ||| ||||||    
T  12763345 caattttctcttgtaaataagaccggagggagtatt 12763380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 153 - 250
Target Start/End: Original strand, 7463465 - 7463562
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaa 250  Q
    |||||||||||||||||| ||||||||||||||  | || |||||||| || | |||||| |  |  |||||| || |||||||||||||||| ||||    
T  7463465 tttacaagaaacaatttactttttaaatacattacataatttatgtatttggtttagattcttgattagatacatacattattcaatgtatctaaaaa 7463562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 289
Target Start/End: Complemental strand, 41850728 - 41850592
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    |||| |||||||| |||| |||||  || ||||| | |||| |||||| || | || ||||||||||| |||| | |||||||||||| |||| |||| |    
T  41850728 tttataagaaacattttacttttttgattcattgcataaatgatgtatttgctctatattttataccaaatacattaattattcaatgaatctaaaaaat 41850629  T
Q  253 caattatttccagtaaataagaccgtaggaagtattt 289  Q
     || | ||||   |||||||||||||||| |||||||    
T  41850628 taactttttcttataaataagaccgtagggagtattt 41850592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 255
Target Start/End: Complemental strand, 46449916 - 46449808
Alignment:
Q  147 attctttttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctg 246  Q
    ||||| ||||||||| |||||| | |||||||||||||| || || |||| ||| || | ||||||||  |  | |||| |||||||||||||||||||     
T  46449916 attctatttacaagagacaattaattttttaaatacattaaataatttatatatttggtttagatttttaattaaatacataaattattcaatgtatcta 46449817  T
Q  247 aaaattcaa 255  Q
    |||| ||||    
T  46449816 aaaagtcaa 46449808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 250
Target Start/End: Complemental strand, 26564053 - 26563956
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaa 250  Q
    |||||||||||||||| | |||| | |||||||||| || ||| ||||||| | |||| | || |||| |||| ||| ||||||||| ||||| ||||    
T  26564053 tttacaagaaacaattgacttttcagatacattgaataatttacgtatctggtctagaatctaaaccaaatacataatttattcaatatatctaaaaa 26563956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 290
Target Start/End: Original strand, 30866261 - 30866398
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    |||| |||| |||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||| ||||||||| |||| |    
T  30866261 tttaaaagagacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactagatacatacattattgaatgtatctaaaaaat 30866360  T
Q  253 caattatttccagtaaataagaccgtaggaagtatttt 290  Q
    ||| | | ||  ||||||||||||| ||| ||||||||    
T  30866361 caactttctcttgtaaataagaccggagggagtatttt 30866398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 13415418 - 13415321
Alignment:
Q  20 agttggtggtactctctccaatgctggtgttagtggacaagcatttaagcatggtcctcagatcagtaatgttcaacagcttgagattgttacaggtt 117  Q
    ||||||||||||| | |||||||||||||||||||| || || |||| ||||||||| |||||||||||||||||  || | ||||||||||||||||    
T  13415418 agttggtggtactttatccaatgctggtgttagtggtcaggcttttaggcatggtccacagatcagtaatgttcagaagatggagattgttacaggtt 13415321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 153 - 288
Target Start/End: Complemental strand, 8243814 - 8243679
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||||| |||||| |||||||||| || |||||||| || | |||||| |  || |||||| || |||||||||||||||| |||| |    
T  8243814 tttacaagagacaatttactttttagatacattgaataatttatgtatttggtttagattcttgactagatacatacattattcaatgtatctaaaaagt 8243715  T
Q  253 caattatttccagtaaataagaccgtaggaagtatt 288  Q
    ||||| | ||  ||||||||||||| | ||||||||    
T  8243714 caattgtctcttgtaaataagaccggatgaagtatt 8243679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 153 - 287
Target Start/End: Original strand, 10049684 - 10049818
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||||| |||||| |||||||||| || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  10049684 tttacaagagacaatttactttttagatacattgaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagt 10049783  T
Q  253 caattatttccagtaaataagaccgtaggaagtat 287  Q
    ||||| | ||  ||||||| ||||| ||| |||||    
T  10049784 caattgtctcttgtaaataggaccggagggagtat 10049818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 139 - 292
Target Start/End: Original strand, 23825151 - 23825304
Alignment:
Q  139 tccctacaattctttttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaa 238  Q
    ||||| |||| || |||||||||||||||||| |||||| ||||||  || || |||||||| || | |||||| |  || |||||| || |||||||||    
T  23825151 tccctccaatcctatttacaagaaacaatttactttttagatacatcaaataatttatgtatttggtttagattcttgactagatacatacattattcaa 23825250  T
Q  239 tgtatctgaaaattcaattatttccagtaaataagaccgtaggaagtatttttt 292  Q
    ||||||| |||| |||| | | ||  ||||||| || || ||| ||||||||||    
T  23825251 tgtatctaaaaagtcaactttctcttgtaaatatgatcggagggagtatttttt 23825304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 257
Target Start/End: Original strand, 22003812 - 22003916
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||| | |||||| |||||||||| || |||| ||| |  | |||||| | ||| |||||| ||||||||||||||||||| |||| |    
T  22003812 tttacaagagacaattaattttttagatacattgaataatttatatatttagtttagattctttactagatacataaattattcaatgtatctaaaaagt 22003911  T
Q  253 caatt 257  Q
    |||||    
T  22003912 caatt 22003916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 257
Target Start/End: Original strand, 22011329 - 22011433
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||| | |||||| |||||||||| || |||| ||| |  | |||||| | ||| |||||| ||||||||||||||||||| |||| |    
T  22011329 tttacaagagacaattaattttttagatacattgaataatttatatatttagtttagattctttactagatacataaattattcaatgtatctaaaaagt 22011428  T
Q  253 caatt 257  Q
    |||||    
T  22011429 caatt 22011433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 6087033 - 6086931
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||||| |||||| |||||||||| || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  6087033 tttacaagagacaatttactttttagatacattgaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagt 6086934  T
Q  253 caa 255  Q
    |||    
T  6086933 caa 6086931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 25846643 - 25846541
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||||| |||||||||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  25846643 tttacaagagacaatttactttttaaatacattaaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaaat 25846544  T
Q  253 caa 255  Q
    |||    
T  25846543 caa 25846541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 52114156 - 52114054
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||||| |||||| ||||||| || || |||||||| || | ||| || | ||| |||||| || |||||||||||||||| |||| |    
T  52114156 tttacaagagacaatttactttttagatacattaaataatttatgtatttggtttaggttctttactagatacatacattattcaatgtatctaaaaaat 52114057  T
Q  253 caa 255  Q
    |||    
T  52114056 caa 52114054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 288
Target Start/End: Original strand, 8243698 - 8243833
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||| | |||||| |||||||||| ||  |||||||||  |  ||| | || |||| |||| ||||||||||||||||||| |||| |    
T  8243698 tttacaagagacaattgactttttagatacattgaataatgtatgtatctagtcaagaatctaaaccaaatacataaattattcaatgtatctaaaaagt 8243797  T
Q  253 caattatttccagtaaataagaccgtaggaagtatt 288  Q
     |||| | ||  ||||||| ||||| ||| ||||||    
T  8243798 aaattgtctcttgtaaataggaccggaggtagtatt 8243833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 292
Target Start/End: Complemental strand, 9465203 - 9465064
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||||| |||||| ||||||  || || |||||||| |||| ||| || |  || |||||| || |||||||||||||||| |||| |    
T  9465203 tttacaagagacaatttactttttagatacataaaataatttatgtatttgatttaggttcttgactagatacatacattattcaatgtatctaaaaagt 9465104  T
Q  253 caattatttccagtaaataagaccgtaggaagtatttttt 292  Q
    ||| | | ||  ||||||| ||||| ||  ||||||||||    
T  9465103 caactttatcttgtaaataggaccggagagagtatttttt 9465064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 288
Target Start/End: Original strand, 26999037 - 26999172
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  26999037 tttacaagagacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagt 26999136  T
Q  253 caattatttccagtaaataagaccgtaggaagtatt 288  Q
    ||| | | ||  ||||||| ||||| ||| ||||||    
T  26999137 caaatgtctcttgtaaataggaccggagggagtatt 26999172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 250
Target Start/End: Original strand, 55139187 - 55139286
Alignment:
Q  151 tttttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaa 250  Q
    ||||||| |||||||||| | |||||| |||||||||| || |||||||| || | || ||| |  |||| |||| ||||||||||||| ||||| ||||    
T  55139187 tttttaccagaaacaattgactttttagatacattgaataatttatgtatttgttttaaattcttgaccaaatacataaattattcaatatatctaaaaa 55139286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 335507 - 335405
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||| |||||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  335507 tttacaaaaaacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagt 335408  T
Q  253 caa 255  Q
    |||    
T  335407 caa 335405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 255
Target Start/End: Original strand, 14768114 - 14768216
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  14768114 tttacaagagacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactagatacatatattattcaatgtatctaaaaaat 14768213  T
Q  253 caa 255  Q
    |||    
T  14768214 caa 14768216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 287
Target Start/End: Complemental strand, 18765390 - 18765256
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    |||||||||||||||||| |||||| || |||| || || |||||||| || | ||| || |  || | |||| || |||||||||||||||| |||| |    
T  18765390 tttacaagaaacaatttactttttagatgcattaaataatttatgtatttggtttaggttcttgactaaatacatacattattcaatgtatctaaaaaat 18765291  T
Q  253 caattatttccagtaaataagaccgtaggaagtat 287  Q
    ||| | | ||  ||||||| ||||| |||||||||    
T  18765290 caactttctcttgtaaatatgaccggaggaagtat 18765256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 294
Target Start/End: Original strand, 9440144 - 9440285
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| ||| || | |||||| |||||||||| ||  |||||||||  |  |||  ||| |||| |||| ||||||||||||||||||| |||| |    
T  9440144 tttacaagagacagttgactttttagatacattgaataatgtatgtatctagtcaagaacttaaaccaaatacataaattattcaatgtatctaaaaagt 9440243  T
Q  253 caattatttccagtaaataagaccgtaggaagtattttttaa 294  Q
     |||| | ||  ||||||| ||||| ||| |||| |||||||    
T  9440244 aaattgtctcttgtaaataggaccggaggtagtaatttttaa 9440285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 258
Target Start/End: Original strand, 44593217 - 44593322
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||||| | || | ||||||||||||||||| ||  ||||||||| ||  | |  ||| |||| |||| ||||||||| ||||||||| ||||||    
T  44593217 tttacaagaaaaagttgactttttaaatacattgaataatatatgtatctaatcaaaaacttaaaccaaatacataaattatttaatgtatctaaaaatt 44593316  T
Q  253 caatta 258  Q
     |||||    
T  44593317 aaatta 44593322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 262
Target Start/End: Complemental strand, 55139305 - 55139196
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    |||| ||||||||||  | |||||| ||| |||||| || |||||||| || |  ||| |||| | || |||| ||||||||||||||||||| |||| |    
T  55139305 tttaaaagaaacaatcaactttttagatatattgaataatttatgtatttggtcaagaatttaaaacaaatacataaattattcaatgtatctaaaaagt 55139206  T
Q  253 caattatttc 262  Q
    ||||| ||||    
T  55139205 caattgtttc 55139196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 257
Target Start/End: Complemental strand, 28565067 - 28564963
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||||| |||||| || |||| || || |||||||| || | |||||| |  || |||||| || |||||||||||||| | |||| |    
T  28565067 tttacaagagacaatttattttttagatgcattaaataatttatgtatttggtttagattcttgactagatacatacattattcaatgtatataaaaagt 28564968  T
Q  253 caatt 257  Q
    |||||    
T  28564967 caatt 28564963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 257
Target Start/End: Original strand, 29019751 - 29019855
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| ||||||||  ||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  29019751 tttacaagagacaatttacattttagatacattaaataatttatgtatttggtttaggttcttgactagatacatatattattcaatgtatctaaaaagt 29019850  T
Q  253 caatt 257  Q
    |||||    
T  29019851 caatt 29019855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 172 - 261
Target Start/End: Complemental strand, 24255984 - 24255895
Alignment:
Q  172 tttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaattcaattattt 261  Q
    |||||||||| |||||| ||| ||||||| || | |||||| || ||||||||| ||||||||||||||||| |||||| ||||||||||    
T  24255984 tttttaaataaattgaataaagtatgtatttggtttagattctagaccagatacgtaaattattcaatgtatatgaaaaatcaattattt 24255895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 293
Target Start/End: Complemental strand, 2229202 - 2229062
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||||| |||||| |||||||||| || |||||||| || | ||| || |  || |||||| || |||||||| ||||||| |||| |    
T  2229202 tttacaagagacaatttactttttagatacattgaataatttatgtatttggtttaggttcttgactagatacatacattattcattgtatctaaaaagt 2229103  T
Q  253 caattatttccagtaaataagaccgtaggaagtatttttta 293  Q
    ||| | | ||  ||||||| ||||| ||| |||||||||||    
T  2229102 caactgtctcttgtaaataggaccggagggagtatttttta 2229062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 287
Target Start/End: Original strand, 41915610 - 41915744
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    |||| |||| |||||||| |||||| ||||||| || || |||||||| || | |||||| |  || |||||| || |||||||||||||||| |||| |    
T  41915610 tttataagagacaatttaatttttagatacattaaataatttatgtatttggtttagattattgactagatacatacattattcaatgtatctaaaaagt 41915709  T
Q  253 caattatttccagtaaataagaccgtaggaagtat 287  Q
    ||||| | ||  ||||||| ||||| ||| |||||    
T  41915710 caattttctcttgtaaataggaccggagggagtat 41915744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 255
Target Start/End: Original strand, 8242240 - 8242341
Alignment:
Q  154 ttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaattc 253  Q
    |||||||| |||||||| |||||||||||||| ||  | |||||||| |||| ||| || |  || |||||| || |||||||||||||||| |||| ||    
T  8242240 ttacaagagacaatttactttttaaatacattaaatgatttatgtatttgatttaggttcttgactagatacatacattattcaatgtatctaaaaaatc 8242339  T
Q  254 aa 255  Q
    ||    
T  8242340 aa 8242341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 163 - 288
Target Start/End: Original strand, 43135070 - 43135195
Alignment:
Q  163 acaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaattcaattatttc 262  Q
    |||||||| |||||| |||||||||| || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |||| | | ||    
T  43135070 acaatttactttttagatacattgaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagtcaactgtctc 43135169  T
Q  263 cagtaaataagaccgtaggaagtatt 288  Q
      ||||||| ||||| ||||||||||    
T  43135170 ttgtaaataggaccggaggaagtatt 43135195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 244
Target Start/End: Original strand, 22781898 - 22781989
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatc 244  Q
    |||||||||||||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||    
T  22781898 tttacaagaaacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatc 22781989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 255
Target Start/End: Original strand, 2339306 - 2339408
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  2339306 tttacaagagacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagt 2339405  T
Q  253 caa 255  Q
    |||    
T  2339406 caa 2339408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 277
Target Start/End: Original strand, 33642474 - 33642598
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| | |||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  33642474 tttacaagagataatttactttttagatacattaaataatttatgtatttggtttaggttcttgactagatacatatattattcaatgtatctaaaaaat 33642573  T
Q  253 caattatttccagtaaataagaccg 277  Q
    ||| | | ||  |||||||||||||    
T  33642574 caactttctcttgtaaataagaccg 33642598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 245
Target Start/End: Original strand, 34028399 - 34028491
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatct 245  Q
    |||||||| ||||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || ||||||||||||||||    
T  34028399 tttacaagtaacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatct 34028491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 155 - 251
Target Start/End: Original strand, 22857822 - 22857918
Alignment:
Q  155 tacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaat 251  Q
    |||||||||||||| | |||||| |||||||||| || ||||||||||||| |||| | || |||| |||| ||||||||||| ||||||| |||||    
T  22857822 tacaagaaacaattgactttttagatacattgaataatttatgtatctgatctagaatctaaaccaaatacataaattattcattgtatctaaaaat 22857918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 153 - 288
Target Start/End: Complemental strand, 44737414 - 44737280
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||||| |||||| |||||||||| || |||||||| || | |||||| |  || |||||| || |||||||||||||||| |||| |    
T  44737414 tttacaagagacaatttactttttagatacattgaataatttatgtatttggt-tagattcttaactagatacatacattattcaatgtatctaaaaagt 44737316  T
Q  253 caattatttccagtaaataagaccgtaggaagtatt 288  Q
    ||||| | ||  ||||||||||||| ||| ||||||    
T  44737315 caattttctcttgtaaataagaccggagggagtatt 44737280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 255
Target Start/End: Complemental strand, 45065726 - 45065610
Alignment:
Q  139 tccctacaattctttttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaa 238  Q
    ||||| || |||| ||||||||| |||||||| |||||| ||||||| || || |||||||| | || |||||| || || |||||| || |||||||||    
T  45065726 tccctccagttctatttacaagagacaatttactttttagatacattaaataatttatgtatttaatttagattctagactagatacatacattattcaa 45065627  T
Q  239 tgtatctgaaaattcaa 255  Q
    ||||||| |||| ||||    
T  45065626 tgtatctaaaaagtcaa 45065610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 290
Target Start/End: Complemental strand, 7765926 - 7765789
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    |||| |||| |||||||| |||||| ||||||| || ||||||||||| |||| ||| || |  || |||||| || |||||||||||||||| |||| |    
T  7765926 tttataagagacaatttactttttagatacattaaataaattatgtatttgatttaggttcttgactagatacatacattattcaatgtatctaaaaagt 7765827  T
Q  253 caattatttccagtaaataagaccgtaggaagtatttt 290  Q
    ||| | | ||  ||||||| ||||| ||| ||||||||    
T  7765826 caactttctcttgtaaataggaccggagggagtatttt 7765789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 262
Target Start/End: Complemental strand, 22857938 - 22857827
Alignment:
Q  150 ctttttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaa 249  Q
    ||||| ||| |||||| |||| |||||| ||||| |||| || |||||||| || | |||||| || | ||||||| ||||||||||||||||||| |||    
T  22857938 cttttcacaggaaacacttta-tttttagatacaatgaataatttatgtatttggtttagattctagatcagatacataaattattcaatgtatctaaaa 22857840  T
Q  250 attcaattatttc 262  Q
    | |||||| ||||    
T  22857839 agtcaattgtttc 22857827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 16241399 - 16241297
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||||| |||||| |||||||||| || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  16241399 tttacaagagacaatttactttttagatacattgaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagt 16241300  T
Q  253 caa 255  Q
    |||    
T  16241299 caa 16241297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 27182143 - 27182086
Alignment:
Q  217 accagatacttaaattattcaatgtatctgaaaattcaattatttccagtaaataaga 274  Q
    |||| |||| |||||||||||||||||||||||| |||||| ||||  ||||||||||    
T  27182143 accaaatacataaattattcaatgtatctgaaaaatcaattgtttcttgtaaataaga 27182086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 27831685 - 27831628
Alignment:
Q  217 accagatacttaaattattcaatgtatctgaaaattcaattatttccagtaaataaga 274  Q
    |||| |||| |||||||||||||||||||||||| |||||| ||||  ||||||||||    
T  27831685 accaaatacataaattattcaatgtatctgaaaaatcaattgtttcttgtaaataaga 27831628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 257
Target Start/End: Original strand, 20427017 - 20427121
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||||| |||||| ||| ||| || || |||||||| |||| ||| || |  || |||||| || |||||||||||||||| |||| |    
T  20427017 tttacaagagacaatttactttttagatagattaaataatttatgtatttgatttaggttcttgactagatacatacattattcaatgtatctaaaaagt 20427116  T
Q  253 caatt 257  Q
    |||||    
T  20427117 caatt 20427121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 42263602 - 42263500
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    |||||||||||||||||| |||||| ||||||| || || |||||||| || | ||| || |  || | |||| || |||||||||||||||| |||| |    
T  42263602 tttacaagaaacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactaaatacatacattattcaatgtatctaaaaaat 42263503  T
Q  253 caa 255  Q
    |||    
T  42263502 caa 42263500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 289
Target Start/End: Original strand, 42341644 - 42341770
Alignment:
Q  163 acaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaattcaattatttc 262  Q
    |||||||| |||||||||||||| || || |||||||| || | |||||| |  |  |||||| || |||||||||||||| | |||| |||||| | ||    
T  42341644 acaatttactttttaaatacattaaataatttatgtatttggtttagattcttgattagatacatacattattcaatgtatttaaaaaatcaattttctc 42341743  T
Q  263 cagtaaataagaccgtaggaagtattt 289  Q
      ||||||| ||||| | |||||||||    
T  42341744 ttgtaaataggaccggatgaagtattt 42341770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 43658057 - 43657955
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| | |||||| |||||| ||||||| || || |||||||| || | ||| ||||  || |||||| || |||||||||||||||| |||| |    
T  43658057 tttacaagagataatttactttttagatacattaaataatttatgtatttggtttaggtttttgactagatacatacattattcaatgtatctaaaaagt 43657958  T
Q  253 caa 255  Q
    |||    
T  43657957 caa 43657955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 250
Target Start/End: Original strand, 38598472 - 38598569
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaa 250  Q
    ||||||||| |||||||| |||||| ||| ||| || || |||||||| || | ||| || |  ||||||||| || |||||||||||||||| ||||    
T  38598472 tttacaagagacaatttactttttatatatattaaataatttatgtatttggtttaggttcttgaccagatacatatattattcaatgtatctaaaaa 38598569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 257
Target Start/End: Complemental strand, 11711456 - 11711352
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||||| |||| | ||||||| || || |||||||| |||  ||| || |  || |||||| || |||||||||||||||| |||| |    
T  11711456 tttacaagagacaatttacttttaagatacattaaataatttatgtatttgacttaggttcttgactagatacatacattattcaatgtatctaaaaagt 11711357  T
Q  253 caatt 257  Q
    |||||    
T  11711356 caatt 11711352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 153 - 277
Target Start/End: Original strand, 33325349 - 33325473
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||||| |||||| ||||||| || || ||||||||||| | ||||||||  || |||||| || |||||||||||||||| |||| |    
T  33325349 tttacaagagacaatttattttttagatacattaaataatttatgtatctggtttagatttttgactagatacatacattattcaatgtatctaaaaagt 33325448  T
Q  253 caattatttccagtaaataagaccg 277  Q
    ||| | ||||  ||||||| |||||    
T  33325449 caactttttcttgtaaataggaccg 33325473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 153 - 287
Target Start/End: Complemental strand, 10065387 - 10065253
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||| |||||||||| |||||| ||||||| || || |||||||| |||| ||| || |  || |||||| || |||||||||||||||| |||| |    
T  10065387 tttacaaaaaacaatttactttttagatacattaaataatttatgtatttgatttaggttcttgacgagatacatacattattcaatgtatctaaaaaat 10065288  T
Q  253 caattatttccagtaaataagaccgtaggaagtat 287  Q
    ||||| | ||  ||||||| ||||| ||| |||||    
T  10065287 caattttctcttgtaaataggaccggagggagtat 10065253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 286
Target Start/End: Original strand, 28989288 - 28989421
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    |||||||||||||||||| |||||| ||||||| || || |||||||| || | |||||| |  || |||||| || |||||||||||||||| | || |    
T  28989288 tttacaagaaacaatttactttttagatacattaaataatttatgtatttggtttagattcttgactagatacgtacattattcaatgtatctaataagt 28989387  T
Q  253 caattatttccagtaaataagaccgtaggaagta 286  Q
    ||| | | ||  ||||||||||||| ||| ||||    
T  28989388 caactttctcttgtaaataagaccggagggagta 28989421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 255
Target Start/End: Original strand, 14281606 - 14281708
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||||| |||||| |||||||||| || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  14281606 tttacaagagacaatttactttttagatacattgaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagt 14281705  T
Q  253 caa 255  Q
    |||    
T  14281706 caa 14281708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 257
Target Start/End: Original strand, 23398096 - 23398200
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||| ||| |||||| |||||||||| || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  23398096 tttacaagagacaacttactttttagatacattgaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagt 23398195  T
Q  253 caatt 257  Q
    |||||    
T  23398196 caatt 23398200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 287
Target Start/End: Original strand, 9548688 - 9548822
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    |||||||||||||||||| |||||| ||||||| || || |||||||| |||| ||| || |  |  ||||||  | ||| |||||||||||| |||| |    
T  9548688 tttacaagaaacaatttactttttagatacattaaataatttatgtatttgatttaggttcttgattagatacacacattcttcaatgtatctaaaaagt 9548787  T
Q  253 caattatttccagtaaataagaccgtaggaagtat 287  Q
    ||||| | ||  ||||||| ||||| ||| |||||    
T  9548788 caattttctcttgtaaataggaccggagggagtat 9548822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 243
Target Start/End: Original strand, 29312455 - 29312545
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtat 243  Q
    ||||||||| |||||||| |||||| ||||||| || || |||||||| |||| ||| || |  || |||||| || ||||||||||||||    
T  29312455 tttacaagagacaatttactttttagatacattaaataatttatgtatttgatttaggttcttgactagatacgtacattattcaatgtat 29312545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 243
Target Start/End: Original strand, 38830499 - 38830589
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtat 243  Q
    ||||||||| |||||||| |||||| |||||||||| || |||||||| || | ||| || |  || |||||| || ||||||||||||||    
T  38830499 tttacaagagacaatttactttttagatacattgaataatttatgtatttggtttaggttcttgactagatacatatattattcaatgtat 38830589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 257
Target Start/End: Complemental strand, 40161305 - 40161201
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||||| |||||| ||||||| || || |||||||| || | ||| ||||  ||  ||||| || |||||||||||||| | |||| |    
T  40161305 tttacaagagacaatttactttttagatacattaaataatttatgtatttggtttaggtttttgactggatacatacattattcaatgtatttaaaaagt 40161206  T
Q  253 caatt 257  Q
    |||||    
T  40161205 caatt 40161201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 288
Target Start/End: Original strand, 7405460 - 7405595
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  7405460 tttacaagagacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagt 7405559  T
Q  253 caattatttccagtaaataagaccgtaggaagtatt 288  Q
    ||||| | ||  ||||||||||||| ||| ||||||    
T  7405560 caattttctcttgtaaataagaccggagggagtatt 7405595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 245
Target Start/End: Complemental strand, 6045813 - 6045721
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatct 245  Q
    ||||||||| |||||||| |||||| ||| ||| || || |||||||| |||| |||||| |  || |||||| || ||||||||||||||||    
T  6045813 tttacaagagacaatttactttttagatagattaaataatttatgtatttgatttagattcttgactagatacatagattattcaatgtatct 6045721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 288
Target Start/End: Complemental strand, 31971162 - 31971027
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| ||||||||  ||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  31971162 tttacaagagacaatttacattttagatacattaaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagt 31971063  T
Q  253 caattatttccagtaaataagaccgtaggaagtatt 288  Q
    ||| | | ||  ||||||||||||| ||| ||||||    
T  31971062 caactttctcttgtaaataagaccggagggagtatt 31971027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 390937 - 390835
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  390937 tttacaagagacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaaat 390838  T
Q  253 caa 255  Q
    |||    
T  390837 caa 390835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 250
Target Start/End: Complemental strand, 6047928 - 6047831
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaa 250  Q
    ||||||||| | |||||| |||||| ||||||| || || |||||||| |||| ||| || |  || |||||| || |||||||||||||||| ||||    
T  6047928 tttacaagagataatttactttttagatacattaaataatttatgtatttgatttaggttcttgactagatacatacattattcaatgtatctaaaaa 6047831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 250
Target Start/End: Complemental strand, 6801683 - 6801586
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaa 250  Q
    |||||||||||||||||| |||||| ||||||| || || | |||||| || | ||| || |  || |||||| || |||||||||||||||| ||||    
T  6801683 tttacaagaaacaatttactttttagatacattaaataattcatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaa 6801586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 257
Target Start/End: Original strand, 30686560 - 30686664
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||||| |||||| ||||||| || || |||||||| |  | ||| ||||  || |||||| || |||||||||||||| | |||| |    
T  30686560 tttacaagagacaatttactttttagatacattaaataatttatgtatttcgtttaggtttttgactagatacatacattattcaatgtatttaaaaagt 30686659  T
Q  253 caatt 257  Q
    |||||    
T  30686660 caatt 30686664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 292
Target Start/End: Original strand, 29374186 - 29374325
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||||| |||||| |||||||||| || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  29374186 tttacaagagacaatttactttttagatacattgaataatttatgtatttggtttaggttcttgacgagatacatacattattcaatgtatctaaaaagt 29374285  T
Q  253 caattatttccagtaaataagaccgtaggaagtatttttt 292  Q
    ||| | | ||  ||||||| ||||| ||| ||||||||||    
T  29374286 caactgtctcttgtaaataggaccggagggagtatttttt 29374325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 243
Target Start/End: Complemental strand, 38393892 - 38393797
Alignment:
Q  148 ttctttttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtat 243  Q
    |||| |||||||||||||||| | |||||||||| |||||| || ||||| || |||| |||||| |  || | |||| |||||||||||||||||    
T  38393892 ttctatttacaagaaacaattgactttttaaatatattgaataatttatgaatttgatttagattcttgactatatacataaattattcaatgtat 38393797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 255
Target Start/End: Original strand, 6910728 - 6910830
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    |||||||||||||||||| |||||| ||||||| || || |||||||| |||| |||||| |  || |||| | || |||||||||| ||||| |||| |    
T  6910728 tttacaagaaacaatttattttttagatacattaaataatttatgtatttgatttagattcttgactagatgcatacattattcaatatatctaaaaagt 6910827  T
Q  253 caa 255  Q
    |||    
T  6910828 caa 6910830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 255
Target Start/End: Original strand, 7749934 - 7750036
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||||| |||||| ||||||| || || |||||||| || | |||||| |  || |||||| || |||||||||||||||| |||| |    
T  7749934 tttacaagagacaatttaatttttagatacattaaataatttatgtatttggtttagattcttgactagatacatacattattcaatgtatctaaaaagt 7750033  T
Q  253 caa 255  Q
    |||    
T  7750034 caa 7750036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 9601725 - 9601623
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||||| |||||| ||||||  || || |||||||| || | ||||||||  || |||||| || |||||||||||||||| |||| |    
T  9601725 tttacaagagacaatttactttttagatacatcaaataatttatgtatttggtttagatttttgactagatacatacattattcaatgtatctaaaaagt 9601626  T
Q  253 caa 255  Q
    |||    
T  9601625 caa 9601623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 37699912 - 37699810
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||||| |||||| |||||||||| || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  37699912 tttacaagagacaatttactttttagatacattgaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagt 37699813  T
Q  253 caa 255  Q
    |||    
T  37699812 caa 37699810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 153 - 250
Target Start/End: Original strand, 7945853 - 7945950
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaa 250  Q
    |||||||||||||||||| |||||| ||||||| || || |||| ||| || | |||||| |  || |||||| || |||||||||||||||| ||||    
T  7945853 tttacaagaaacaatttactttttagatacattaaataatttatatatttggtttagattcttgactagatacatacattattcaatgtatctaaaaa 7945950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 289
Target Start/End: Original strand, 25027710 - 25027846
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||||| |||||| |||||||||| || |||||||| || | ||| || |  || |||||  || |||||||||||||||| |||| |    
T  25027710 tttacaagagacaatttactttttagatacattgaataatttatgtatttggtttaggttcttgactagatatatacattattcaatgtatctaaaaagt 25027809  T
Q  253 caattatttccagtaaataagaccgtaggaagtattt 289  Q
    ||| | | ||  ||||||| ||||| ||| |||||||    
T  25027810 caactgtctcttgtaaataggaccggagggagtattt 25027846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 288
Target Start/End: Original strand, 13144896 - 13145031
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  13144896 tttacaagagacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaaat 13144995  T
Q  253 caattatttccagtaaataagaccgtaggaagtatt 288  Q
    ||| | | ||  ||||||| ||||| ||| ||||||    
T  13144996 caactgtctcttgtaaataggaccggagggagtatt 13145031  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 288
Target Start/End: Original strand, 23411181 - 23411316
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    |||| |||| |||| ||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  23411181 tttataagatacaaattactttttagatacattaaataatttatgtatttggtttaggttcttgactagatacatatattattcaatgtatctaaaaaat 23411280  T
Q  253 caattatttccagtaaataagaccgtaggaagtatt 288  Q
    ||||| | ||  ||||||||||||| ||| ||||||    
T  23411281 caattttctcttgtaaataagaccggagggagtatt 23411316  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 31803090 - 31802988
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    |||||||||||||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||  || |||||||||||||||| |||| |    
T  31803090 tttacaagaaacaatttactttttagatacattaaataatttatgtatttggtttaggttattgactagatatatacattattcaatgtatctaaaaagt 31802991  T
Q  253 caa 255  Q
    |||    
T  31802990 caa 31802988  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 255
Target Start/End: Original strand, 41989580 - 41989682
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  41989580 tttacaagagacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagt 41989679  T
Q  253 caa 255  Q
    |||    
T  41989680 caa 41989682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 257
Target Start/End: Complemental strand, 2959371 - 2959267
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    |||||||||||||||||| |||||| ||||||| || ||  ||||||| |||| || ||| |  || |||||  || ||| |||||||||||| |||| |    
T  2959371 tttacaagaaacaatttactttttagatacattaaataatatatgtatttgatttaaattcttgactagatatatacattcttcaatgtatctaaaaagt 2959272  T
Q  253 caatt 257  Q
    |||||    
T  2959271 caatt 2959267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 257
Target Start/End: Complemental strand, 2967840 - 2967736
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    |||||||||||||||||| |||||| ||||||| || ||  ||||||| |||| || ||| |  || |||||  || ||| |||||||||||| |||| |    
T  2967840 tttacaagaaacaatttactttttagatacattaaataatatatgtatttgatttaaattcttgactagatatatacattcttcaatgtatctaaaaagt 2967741  T
Q  253 caatt 257  Q
    |||||    
T  2967740 caatt 2967736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 276
Target Start/End: Complemental strand, 14338952 - 14338824
Alignment:
Q  148 ttctttttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctga 247  Q
    |||||||||||||| | | || | |||||| |||||||||| || ||||||||||  |  ||| |||| |||| |||| ||||||||| ||| ||||| |    
T  14338952 ttctttttacaagagaaatttaactttttagatacattgaataatttatgtatctattcaagaatttaaaccaaatacataaattatttaatttatctaa 14338853  T
Q  248 aaattcaattatttccagtaaataagacc 276  Q
    ||| | |||| | ||  ||||||||||||    
T  14338852 aaaattaattgtctcttgtaaataagacc 14338824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 289
Target Start/End: Original strand, 26898207 - 26898343
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||||| |||||||||||||| || || |||||||| || | ||| || |  || | |||| || ||||||||||| |||| |||| |    
T  26898207 tttacaagagacaatttactttttaaatacattaaataatttatgtatttggtttaggttcttgactaaatacatacattattcaatgcatctaaaaagt 26898306  T
Q  253 caattatttccagtaaataagaccgtaggaagtattt 289  Q
    ||| | | ||  ||||||| ||||| ||| |||||||    
T  26898307 caactttctcttgtaaataggaccggagggagtattt 26898343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 277
Target Start/End: Complemental strand, 42311942 - 42311818
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    ||||||||| |||||||| |||||| ||||||| || || |||||||| || | ||  ||||  || | |||| || |||||||||||||| | |||| |    
T  42311942 tttacaagagacaatttattttttagatacattaaataatttatgtatttggtttaagtttttgactaaatacatacattattcaatgtatttaaaaagt 42311843  T
Q  253 caattatttccagtaaataagaccg 277  Q
    ||||| ||||  ||||||| |||||    
T  42311842 caattttttcttgtaaataggaccg 42311818  T

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Target: scaffold0123 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 255
Target Start/End: Original strand, 29260 - 29362
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    |||||||||||||||||| |||||| ||||||| || || |||||||| || | ||| || |  || |||||| || |||||||||||||||| |||| |    
T  29260 tttacaagaaacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactagatacatacattattcaatgtatctaaaaagt 29359  T
Q  253 caa 255  Q
    |||    
T  29360 caa 29362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 492437 - 492335
Alignment:
Q  153 tttacaagaaacaatttagtttttaaatacattgaacaaattatgtatctgatatagattttataccagatacttaaattattcaatgtatctgaaaatt 252  Q
    |||||||||||||||||| |||||| ||||||| || || |||||||| || | ||| || |  || | |||| || |||||||||||||||| |||| |    
T  492437 tttacaagaaacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactaaatacatacattattcaatgtatctaaaaaat 492338  T
Q  253 caa 255  Q
    |||    
T  492337 caa 492335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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