View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11214_high_9 (Length: 399)

Name: NF11214_high_9
Description: NF11214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11214_high_9
NF11214_high_9
[»] chr4 (3 HSPs)
chr4 (19-388)||(48517374-48517738)
chr4 (194-388)||(48514675-48514869)
chr4 (197-378)||(12704786-12704970)
[»] chr5 (1 HSPs)
chr5 (199-388)||(37075295-37075483)
[»] chr8 (2 HSPs)
chr8 (197-388)||(33293489-33293682)
chr8 (192-265)||(19488912-19488986)
[»] chr2 (3 HSPs)
chr2 (156-252)||(32745075-32745172)
chr2 (197-271)||(14918363-14918438)
chr2 (314-351)||(14104586-14104623)
[»] chr1 (2 HSPs)
chr1 (196-268)||(6786502-6786575)
chr1 (314-351)||(24159861-24159898)
[»] chr7 (1 HSPs)
chr7 (314-345)||(6898424-6898455)
[»] chr3 (2 HSPs)
chr3 (314-351)||(48432404-48432441)
chr3 (314-351)||(48435890-48435927)


Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 388
Target Start/End: Original strand, 48517374 - 48517738
Alignment:
Q  19 cataatcacataataattcatatgtacctttagagatta-tttcataaccaaaatttgaagttcattgaaataagtaccttcgtattagaaatggctcgt 117  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  48517374 cataatcacataataattcatatgtacctttagagattactttcataaccaaaatttgaagttcattgaaataagtaccttcatatcagaaatggctcgt 48517473  T
Q  118 ttaaatccatccataagaacgacgatgtgctcgacttacatgacaacaaacatggcagatgctctaaacgtcttaaaattgttggaacatttcttgaaca 217  Q
    ||||||||    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48517474 ttaaatcc----ataagaacgacgatgtgctcgacttacatgacaacaaatatggcagatgctctaaacgtcttaaaattgttggaacatttcttgaaca 48517569  T
Q  218 cttaaattgttgctgaacatgtcgaacacttgaaatcatttctgcaaagaatcaaattttaacacnnnnnnntaatatcgttagatacaaaattggggct 317  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||       ||||||| ||||||||||||||||||||    
T  48517570 cttaaattgttgatgaacatgtcgaacacttgaaatcatttctgcaaagaatcaaactttaacac--aaaaataatatcattagatacaaaattggggct 48517667  T
Q  318 gagtcgcggactagatcgctctctttaaaacgttccgcggctctgcctgaattgtgcaacagatctttctt 388  Q
    |||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  48517668 gagtcgcggactaggtcgctctctttaagacgttctgcggctctgcctgaattgtgcaacagatctttctt 48517738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 194 - 388
Target Start/End: Original strand, 48514675 - 48514869
Alignment:
Q  194 aattgttggaacatttcttgaacacttaaattgttgctgaacatgtcgaacacttgaaatcatttctgcaaagaatcaaattttaacacnnnnnnntaat 293  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||       ||||    
T  48514675 aattgttggaccatttcttgaacacttaaattgttgttgaacatgtcgaacacttgaaatcatttctgcaaagaatcaaactttaacacaaaaaaataat 48514774  T
Q  294 atcgttagatacaaaattggggctgagtcgcggactagatcgctctctttaaaacgttccgcggctctgcctgaattgtgcaacagatctttctt 388  Q
    |||||| |||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||    
T  48514775 atcgttcgatacaaaattggggctgagtcgcagactaggtcgctctctttaagacgttccgcggctctgcctgaattgtacaatagatctttctt 48514869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 197 - 378
Target Start/End: Complemental strand, 12704970 - 12704786
Alignment:
Q  197 tgttggaacatttcttgaacac-ttaaattgttgctgaacatgtcgaacacttgaaatcatttctgcaaagaa-tcaaattttaa--cacnnnnnnntaa 292  Q
    |||||||||||||||||||||| |||||| |||| || |  |||||||||||||||| || ||||||||| || ||||| || ||  |||        |     
T  12704970 tgttggaacatttcttgaacactttaaatagttgttgcatctgtcgaacacttgaaaacaattctgcaaaaaattcaaacttgaaagcacacaaaataat 12704871  T
Q  293 tatcgttagatacaaaattggggctgagtcgcggactagatcgctctctttaaaacgttccgcggctctgcctgaattgtgcaaca 378  Q
    ||| ||||||||||||||| ||||||||||||||||||| ||||||||||||| || ||  |||||||||||| ||| ||||||||    
T  12704870 tat-gttagatacaaaattcgggctgagtcgcggactaggtcgctctctttaagaccttttgcggctctgcctcaatggtgcaaca 12704786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 199 - 388
Target Start/End: Original strand, 37075295 - 37075483
Alignment:
Q  199 ttggaacatttcttgaacacttaaattgttgctgaacatgtcgaacacttgaaatcatttctgcaaagaatcaaattttaacacnnnnnnntaatatcgt 298  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||| ||       |||  | ||    
T  37075295 ttggaacatttcttgaacacttaaattgttgctgcatatgtcgaacacttgaaatcatttctgcaaagaatcaaactttaaaac-ataaaataactttgt 37075393  T
Q  299 tagatacaaaattggggctgagtcgcggactagatcgctctctttaaaacgttccgcggctctgcctgaattgtgcaacagatctttctt 388  Q
    ||||||||||||| |  ||||||    || ||  ||||||||||||| |||||| |||||||||||||||| |||||||| || ||||||    
T  37075394 tagatacaaaatttgaactgagttatagattatgtcgctctctttaagacgttctgcggctctgcctgaatggtgcaacatatatttctt 37075483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 197 - 388
Target Start/End: Original strand, 33293489 - 33293682
Alignment:
Q  197 tgttggaacatttcttgaacacttaaattgttgctgaacatgtcgaacacttgaaatcatttctgcaaagaatcaaa-ttttaacac-nnnnnnntaata 294  Q
    ||||||||||||||||||||||||||| |||||||| | |  ||||||||||||||| ||||||||||| ||||||| | |||||||        ||||     
T  33293489 tgttggaacatttcttgaacacttaaaatgttgctgcatacatcgaacacttgaaattatttctgcaaaaaatcaaactcttaacacacaaaaaataatt 33293588  T
Q  295 tcgttagatacaaaattggggctgagtcgcggactagatcgctctctttaaaacgttccgcggctctgcctgaattgtgcaacagatctttctt 388  Q
    |||||| |||||||||| |||||||||||| |||||  || |||| ||||| | |||||| |||||||||||||| || ||||| |||||||||    
T  33293589 tcgttaaatacaaaatttgggctgagtcgcagactacgtcactctttttaatatgttccgtggctctgcctgaatagtacaacatatctttctt 33293682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 265
Target Start/End: Complemental strand, 19488986 - 19488912
Alignment:
Q  192 aaaattgttggaacatttcttgaacact-taaattgttgctgaacatgtcgaacacttgaaatcatttctgcaaa 265  Q
    |||||||||| |||||||||||||||||  ||||||||| || |  ||||||||||||||||| |||| ||||||    
T  19488986 aaaattgttgaaacatttcttgaacactaaaaattgttgttgcatctgtcgaacacttgaaattatttatgcaaa 19488912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 156 - 252
Target Start/End: Original strand, 32745075 - 32745172
Alignment:
Q  156 catgacaacaaacatggcagatgctctaaacgtcttaaaattgttggaacatttcttgaacac-ttaaattgttgctgaacatgtcgaacacttgaaa 252  Q
    |||||||| ||||||||||||| || | | ||||||||||||||||||||||||||||||||| |||||| | ||||| |  ||||||||||||||||    
T  32745075 catgacaataaacatggcagatactatgatcgtcttaaaattgttggaacatttcttgaacactttaaataggtgctgcatctgtcgaacacttgaaa 32745172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 271
Target Start/End: Original strand, 14918363 - 14918438
Alignment:
Q  197 tgttggaacatttcttgaacactt-aaattgttgctgaacatgtcgaacacttgaaatcatttctgcaaagaatca 271  Q
    |||||||||||||||||||||||| |||||||||||| |  | ||||||||||| ||| ||||||||||| |||||    
T  14918363 tgttggaacatttcttgaacactttaaattgttgctgcatctatcgaacacttggaattatttctgcaaaaaatca 14918438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 351
Target Start/End: Original strand, 14104586 - 14104623
Alignment:
Q  314 ggctgagtcgcggactagatcgctctctttaaaacgtt 351  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  14104586 ggctgagtcgcggactaggtcgctctctttaagacgtt 14104623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 268
Target Start/End: Complemental strand, 6786575 - 6786502
Alignment:
Q  196 ttgttggaacatttcttgaacac-ttaaattgttgctgaacatgtcgaacacttgaaatcatttctgcaaagaa 268  Q
    ||||||||||||||||||||||| ||||||| ||| || |  |||| |||| |||||||||||| |||||||||    
T  6786575 ttgttggaacatttcttgaacactttaaatttttgttgcatctgtcaaacatttgaaatcatttatgcaaagaa 6786502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 351
Target Start/End: Complemental strand, 24159898 - 24159861
Alignment:
Q  314 ggctgagtcgcggactagatcgctctctttaaaacgtt 351  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  24159898 ggctgagtcgcggactaggtcgctctctttaagacgtt 24159861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 314 - 345
Target Start/End: Complemental strand, 6898455 - 6898424
Alignment:
Q  314 ggctgagtcgcggactagatcgctctctttaa 345  Q
    ||||||||||||||||||||||||||||||||    
T  6898455 ggctgagtcgcggactagatcgctctctttaa 6898424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 351
Target Start/End: Original strand, 48432404 - 48432441
Alignment:
Q  314 ggctgagtcgcggactagatcgctctctttaaaacgtt 351  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  48432404 ggctgagtcgcggactaggtcgctctctttaagacgtt 48432441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 351
Target Start/End: Complemental strand, 48435927 - 48435890
Alignment:
Q  314 ggctgagtcgcggactagatcgctctctttaaaacgtt 351  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  48435927 ggctgagtcgcggactaggtcgctctctttaagacgtt 48435890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University