View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11214_low_1 (Length: 799)
Name: NF11214_low_1
Description: NF11214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11214_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 506; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 39 - 729
Target Start/End: Complemental strand, 55453648 - 55452960
Alignment:
| Q |
39 |
ataatccatcatggactccatctatgatagcatctgcgatcaccacaaccagcagaaagtatgacaaccttggagatgctctgatgaccgaaggttatga |
138 |
Q |
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| T |
55453648 |
ataatccatcatggactccatctatgatagcatctgcgatcaccacaaccagcagaaagtatgacaagcttggagatcctctgatggccgaaggctacga |
55453549 |
T |
|
| Q |
139 |
ggtcaacaccttgcattccctccactccttttgaacatggtgcgggcattgtggaccctagccatgtcaataatccaggcttggttctatcttcaggtat |
238 |
Q |
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|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
55453548 |
ggccaacaccttgcat-ccctccactccttttgaacatggtgcgggcattgtggaccctagccgtgtcaataatccaggcttggttctatcttcaggtat |
55453450 |
T |
|
| Q |
239 |
atatgtttctactaataatagaaaattcacagcttgatcagcttggttcttttgctcaaattcgaagggtgattaacattcatctaccctaaaagagatt |
338 |
Q |
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||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||| ||||| |
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| T |
55453449 |
atatgttgctactagtaatagaaaattcactgcttgatcagcttggttcttttgctcaaattcaaagggtgattaacattcatttgtcctaaaacagatt |
55453350 |
T |
|
| Q |
339 |
acgaagacttcatcagcttcttgtgctctttgccaaacatcgatacaaagacaataactacagcgatgggagaaacctgcaatagcccatttgactatcc |
438 |
Q |
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| |||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||| ||||| |||||| |||||||| ||||||||||||||||| |
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| T |
55453349 |
atgaagacttcatcagcttcctgtgctctttgccaaacattgatacgaagacaataactagagcgacgggagagacctgcaacagcccatttgactatcc |
55453250 |
T |
|
| Q |
439 |
atctaatttaaaccttccatcagtgacaatatctgcacttaaaggatcaatttatgtgaaaagaattgtcatgaatgtagggaacagcacaaagccatac |
538 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| || ||||| |
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| T |
55453249 |
atctaatttaaaccttccatcagtgacaatatctgcacttaaaggatcaatttatttgaaaagaactgtcatgaatgtagggaacagcacagagacatac |
55453150 |
T |
|
| Q |
539 |
ttgtgcggtgttctagctcctaatggaattgcagttaacttgtatccaacnnnnnnnnacaataactccacaaagaacacaagatctggaaatacaaatc |
638 |
Q |
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|| |||||||||| |||||||||| ||| |||||||||| |||||||||| || |||||||||||| |||| || |||||||||||||||||| |
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| T |
55453149 |
ttatgcggtgttcgagctcctaatagaactgcagttaacctgtatccaac-tttttttaccataactccacaaggaactcaggatctggaaatacaaatc |
55453051 |
T |
|
| Q |
639 |
aatgtcactcaaccaagtgaagattttagctttggtgaaattattttggcaggaagtatgaaccacatagtaagaataactttgtcagttg |
729 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55453050 |
aatgtcactcaaccaagtgaagattttagctttggtgaaattgttttggcaggaagtatgaaccacatagtaagaataactttgtcagttg |
55452960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 307 - 799
Target Start/End: Original strand, 55704941 - 55705433
Alignment:
| Q |
307 |
gtgattaacattcatctaccctaaaagagattacgaagacttcatcagcttcttgtgctctttgccaaacatcgatacaaagacaataactacagcgatg |
406 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55704941 |
gtgattaacattcatctaccctaaaacagattacgaagacttcatcagcttcttgtgctctttgccaaacatcgatacaaagacaataactacagcgact |
55705040 |
T |
|
| Q |
407 |
ggagaaacctgcaatagcccatttgactatccatctaatttaaaccttccatcagtgacaatatctgcacttaaaggatcaatttatgtgaaaagaattg |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
55705041 |
ggagaaacctgcaatagcccatttgactatccatctaatttaaaccttccatcagtgacaatatctgcacttaaaggatcaatttatgtgaaaagaactg |
55705140 |
T |
|
| Q |
507 |
tcatgaatgtagggaacagcacaaagccatacttgtgcggtgttctagctcctaatggaattgcagttaacttgtatccaacnnnnnnnnacaataactc |
606 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||| |
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| T |
55705141 |
tcatgaatgtagggaacagcacagagacatacttgtgcggtgttctagctcctaatggaactgcagttaacttgtatccaacttttttttaccataactc |
55705240 |
T |
|
| Q |
607 |
cacaaagaacacaagatctggaaatacaaatcaatgtcactcaaccaagtgaagattttagctttggtgaaattattttggcaggaagtatgaaccacat |
706 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
55705241 |
cacatagaacacgggatctggaaatacaaatcaatgtcactcaaccaagtgaagattttagctttggtgaaattgttttggcaggaagtatgaaccacat |
55705340 |
T |
|
| Q |
707 |
agtaagaataactttgtcagttggactcttgggttagaagatggtaaaattctaatggctagagaactaatagccatcatccgagcctcagga |
799 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
55705341 |
agtaagaataactttgtcagttggactcttgggttagaagatggtaaaattctaatggctaaagaactaatagccatcatccgagcctcagga |
55705433 |
T |
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