View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11214_low_13 (Length: 300)
Name: NF11214_low_13
Description: NF11214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11214_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 7 - 291
Target Start/End: Complemental strand, 37287315 - 37287030
Alignment:
| Q |
7 |
caaagaacttaacaaccaggtattaattgttgcacttcatgctgcttatcttcttttcaaggatcatattattagcatttaagtcatatacac-aacatc |
105 |
Q |
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| T |
37287315 |
caaagaacttaacaaccaggtattaattgttgcacttcatgctgcttatcttcttttcaaggatcatattattagcatttaattcatatacaccaacatc |
37287216 |
T |
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| Q |
106 |
taaagattttttacacagtcaattgatcataatcgttagatcnnnnnnncgcttgactttcaatcataactacttgtaaagtcacgcatattgtagttgt |
205 |
Q |
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| T |
37287215 |
taaagattttttacacagtcaattgatcataatcgttagatcaaaaaaacgcttgactttcaatcataactacttgtaaagtcacgcatattgtagttgt |
37287116 |
T |
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| Q |
206 |
gatttattgatagtgtaaaactttttacatttagagtatcaaaattaaactattattattaatcaactgactaacttgtatttcat |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37287115 |
gatttattgatagtgtaaaactttttacatttagagtatcaaaattaaactattattattaatcaactgactaacttgtatttcat |
37287030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 24547764 - 24547693
Alignment:
| Q |
164 |
ttcaatcataactacttgtaaagtcacgcatattgtag-ttgtgatttattgatagtgtaaaactttttaca |
234 |
Q |
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||||||||||||||||| |||| |||| |||| | | |||||||||||||| |||||||||||||||||| |
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| T |
24547764 |
ttcaatcataactacttctaaaatcacagatatgattggttgtgatttattgacagtgtaaaactttttaca |
24547693 |
T |
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