View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11214_low_15 (Length: 274)
Name: NF11214_low_15
Description: NF11214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11214_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 18012520 - 18012765
Alignment:
| Q |
18 |
cacaagcgacttggtcactgtcatattcaaagaatgttgaacttgaagaagaaagacatgtcaagaggtctaccggtactttctgatcatttgccaaatt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
18012520 |
cacaagcgacttggtcactgtcatattcaaagaatgttgaacttgaagaagaaagacatgtcaagaggtctaccggtactttctgatgatttgccaaact |
18012619 |
T |
|
| Q |
118 |
gcaatgcttgccagtttggtaaacaaaacagaattccatttcccaaaactgtttggagagccactaaaaagctgcaactcattaacacagatgtcgcagg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
18012620 |
gcaatgcttgccagtttggtaaacaaaacagaattccatttcccaaaactgtttggagagccactaaaaagctgcaactcattcacacagatgtcgcagg |
18012719 |
T |
|
| Q |
218 |
acctcaaagaactccatcattacaaggtagcctatattttattctt |
263 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18012720 |
acctcaaagaactccatcattacaaggtagcctatattttattctt |
18012765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 43442880 - 43443109
Alignment:
| Q |
18 |
cacaagcgacttggtcactgtcatattcaaagaatgttgaacttgaagaagaaagacatgtcaagaggtctaccggtactttctgatcatttgccaaatt |
117 |
Q |
| |
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|||||| |||||||||| |||||||||||||||||||||||| || | |||||||||||| | |||||||||||| |||| || ||||||||||||||| |
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| T |
43442880 |
cacaagtgacttggtcattgtcatattcaaagaatgttgaacatggaaaagaaagacatgacgagaggtctaccgatactgtccaatcatttgccaaatt |
43442979 |
T |
|
| Q |
118 |
gcaatgcttgccagtttggtaaacaaaacagaattccatttcccaaaactgtttggagagccactaaaaagctgcaactcattaacacagatgtcgcagg |
217 |
Q |
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| T |
43442980 |
gcaatgcttgtcaatttggtaaacaaaacagattaccatttcccaaaacaacttggagagcctcttagaagttgcaactcattcacacttatttggcagg |
43443079 |
T |
|
| Q |
218 |
acctcaaagaactccatcattacaaggtag |
247 |
Q |
| |
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|||||||||||| ||||||||||||||||| |
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| T |
43443080 |
acctcaaagaacaccatcattacaaggtag |
43443109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 129; Significance: 8e-67; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 43584196 - 43584440
Alignment:
| Q |
18 |
cacaagcgacttggtcactgtcatattcaaagaatgttgaacttgaagaagaaagacatgtcaagaggtctaccggtactttctgatcatttgccaaatt |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||| || | |||||||||||| | |||||||||||| |||| || ||||||||||||||| |
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| T |
43584196 |
cacaagcgacttggtcattgtcatattcaaagaatgttaaacatggaaaagaaagacatgacgagaggtctaccgatactgtccaatcatttgccaaatt |
43584295 |
T |
|
| Q |
118 |
gcaatgcttgccagtttggtaaacaaaacagaattccatttcccaaaactgtttggagagccactaaaaagctgcaactcattaacacagatgtcgcagg |
217 |
Q |
| |
|
|||||||||| || |||||||||||||||||| | |||||||||||||| |||||||||| || | ||| ||||||||||| |||| ||||| ||||| |
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|
| T |
43584296 |
gcaatgcttgtcaatttggtaaacaaaacagattaccatttcccaaaacaacttggagagcctctcagaagttgcaactcattcacactgatgtggcagg |
43584395 |
T |
|
| Q |
218 |
acctcaaagaactccatcattacaaggtagcctatattttattct |
262 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || || |||||||| |
|
|
| T |
43584396 |
acctcaaagaacaccatcattacaaggtagtctctactttattct |
43584440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 8987311 - 8987555
Alignment:
| Q |
18 |
cacaagcgacttggtcactgtcatattcaaagaatgttgaacttgaagaagaaagacatgtcaagaggtctaccggtactttctgatcatttgccaaatt |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||| || | |||||||||||| | |||||||||||| |||| || ||||||||||||||| |
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| T |
8987311 |
cacaagcgacttggtcattgtcatattcaaagaatgttaaacatggaaaagaaagacatgacgagaggtctaccgatactgtccaatcatttgccaaatt |
8987410 |
T |
|
| Q |
118 |
gcaatgcttgccagtttggtaaacaaaacagaattccatttcccaaaactgtttggagagccactaaaaagctgcaactcattaacacagatgtcgcagg |
217 |
Q |
| |
|
|||||||||| || |||||||||||||||| | | |||||||||||||| |||||||||| || | ||| ||||||||||| |||| ||||| ||||| |
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| T |
8987411 |
gcaatgcttgtcaatttggtaaacaaaacaaattaccatttcccaaaacaacttggagagcctcttagaagttgcaactcattcacactgatgtggcagg |
8987510 |
T |
|
| Q |
218 |
acctcaaagaactccatcattacaaggtagcctatattttattct |
262 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || || |||||||| |
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|
| T |
8987511 |
acctcaaagaacaccatcattacaaggtagtctctactttattct |
8987555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 35968584 - 35968340
Alignment:
| Q |
18 |
cacaagcgacttggtcactgtcatattcaaagaatgttgaacttgaagaagaaagacatgtcaagaggtctaccggtactttctgatcatttgccaaatt |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||| || | |||||||||||| | |||||||||||| |||| || ||||||||||||||| |
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|
| T |
35968584 |
cacaagcgacttggtcattgtcatattcaaagaatgttaaacatggaaaagaaagacatgacgagaggtctaccgatactgtccaatcatttgccaaatt |
35968485 |
T |
|
| Q |
118 |
gcaatgcttgccagtttggtaaacaaaacagaattccatttcccaaaactgtttggagagccactaaaaagctgcaactcattaacacagatgtcgcagg |
217 |
Q |
| |
|
|||||||||| || |||||||||||||||||| | |||||||||||||| |||||||||| || | ||| ||||||||||| |||| ||||| ||||| |
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| T |
35968484 |
gcaatgcttgtcaatttggtaaacaaaacagattaccatttcccaaaacaacttggagagcctctcagaagttgcaactcattcacactgatgtggcagg |
35968385 |
T |
|
| Q |
218 |
acctcaaagaactccatcattacaaggtagcctatattttattct |
262 |
Q |
| |
|
|||||||||||| |||||||||||||||| || || |||||||| |
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| T |
35968384 |
acctcaaagaacaacatcattacaaggtagtctctactttattct |
35968340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 35989996 - 35989752
Alignment:
| Q |
18 |
cacaagcgacttggtcactgtcatattcaaagaatgttgaacttgaagaagaaagacatgtcaagaggtctaccggtactttctgatcatttgccaaatt |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||| || | |||||||||||| | |||||||||||| |||| || ||||||||||||||| |
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|
| T |
35989996 |
cacaagcgacttggtcattgtcatattcaaagaatgttaaacatggaaaagaaagacatgacgagaggtctaccgatactgtccaatcatttgccaaatt |
35989897 |
T |
|
| Q |
118 |
gcaatgcttgccagtttggtaaacaaaacagaattccatttcccaaaactgtttggagagccactaaaaagctgcaactcattaacacagatgtcgcagg |
217 |
Q |
| |
|
|||||||||| || |||||||||||||||||| | |||||||||||||| |||||||||| || | ||| ||||||||||| |||| ||||| ||||| |
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|
| T |
35989896 |
gcaatgcttgtcaatttggtaaacaaaacagattaccatttcccaaaacaacttggagagcctctcagaagttgcaactcattcacactgatgtggcagg |
35989797 |
T |
|
| Q |
218 |
acctcaaagaactccatcattacaaggtagcctatattttattct |
262 |
Q |
| |
|
|||||||||||| |||||||||||||||| || || |||||||| |
|
|
| T |
35989796 |
acctcaaagaacaacatcattacaaggtagtctctactttattct |
35989752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 26255345 - 26255589
Alignment:
| Q |
18 |
cacaagcgacttggtcactgtcatattcaaagaatgttgaacttgaagaagaaagacatgtcaagaggtctaccggtactttctgatcatttgccaaatt |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||| || | |||||||||||| | |||||||||||| |||| || ||||||||||||||| |
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|
| T |
26255345 |
cacaagcgacttggtcattgtcatattcaaagaatgttaaacatggaaaagaaagacatgacgagaggtctaccgatactgtccaatcatttgccaaatt |
26255444 |
T |
|
| Q |
118 |
gcaatgcttgccagtttggtaaacaaaacagaattccatttcccaaaactgtttggagagccactaaaaagctgcaactcattaacacagatgtcgcagg |
217 |
Q |
| |
|
|||||||||| || |||||||||||||||||| | |||||||||||||| |||||||||| || | ||| ||||||||||| |||| ||||| ||||| |
|
|
| T |
26255445 |
gcaatgcttgtcaatttggtaaacaaaacagattaccatttcccaaaacaacttggagagcctctcagaagttgcaactcattcacactgatgtggcagg |
26255544 |
T |
|
| Q |
218 |
acctcaaagaactccatcattacaaggtagcctatattttattct |
262 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || || |||||||| |
|
|
| T |
26255545 |
acctcaaagaacaccatcattacaaggtagtctctactttattct |
26255589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 103 - 244
Target Start/End: Original strand, 16940467 - 16940608
Alignment:
| Q |
103 |
atcatttgccaaattgcaatgcttgccagtttggtaaacaaaacagaattccatttcccaaaactgtttggagagccactaaaaagctgcaactcattaa |
202 |
Q |
| |
|
||||||||| ||||||||||||||| || |||||||||| ||||||| | ||||||||||||| |||||||| | || ||||| ||||||| ||| | |
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|
| T |
16940467 |
atcatttgcaaaattgcaatgcttgtcaatttggtaaaccaaacagattgacatttcccaaaacaacttggagaggctctcaaaagttgcaacttattca |
16940566 |
T |
|
| Q |
203 |
cacagatgtcgcaggacctcaaagaactccatcattacaagg |
244 |
Q |
| |
|
||| ||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
16940567 |
cactgatgtggcagaacctcaaagaacaccatcattacaagg |
16940608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 16939091 - 16939170
Alignment:
| Q |
18 |
cacaagcgacttggtcactgtcatattcaaagaatgttgaacttgaagaagaaagacatgtcaagaggtctaccggtact |
97 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||| || | |||||||||||||| ||||||||||||||||| |
|
|
| T |
16939091 |
cacaagcgacttggtcattgtcatattcagagaatgttgaacatggaaaagaaagacatgtcgagaggtctaccggtact |
16939170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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