View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11214_low_16 (Length: 251)
Name: NF11214_low_16
Description: NF11214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11214_low_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 42146104 - 42146344
Alignment:
| Q |
11 |
cacagatatagcttggaaaattctaaaactggcggnnnnnnnnnnnttgttgacgaatatcatctagagaataacattatgcnnnnnnntctacaacatg |
110 |
Q |
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| T |
42146104 |
cacagatatagcttggaaaattctaaaactggaggaagaaaaaaaattgttgacgaatatcatctagagaataacattatgcaaaaaaatctacaacatg |
42146203 |
T |
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| Q |
111 |
tagacttgtttcaagaaccacacaatcctccgttcgccgacacacttcaaaacaaatatctaactacatctctcaatattgtaataaaagagtgttatag |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42146204 |
tagacttgtttcaagaaccacacaatcctccgttcgccgacactcttcaaaacaaatatctaactacatctctcaatattgtaataaaagagtgttatag |
42146303 |
T |
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| Q |
211 |
gataaaataagaaaatcaaatacaaacttaaagtatttttt |
251 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| |
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| T |
42146304 |
gataaaataagaaaatcaaatacaaacttagagtatttttt |
42146344 |
T |
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