View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11214_low_17 (Length: 243)
Name: NF11214_low_17
Description: NF11214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11214_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 41623494 - 41623262
Alignment:
| Q |
14 |
gaaggtgaagacggtgaatcttctaattcaaacccatttgttacttggtttactgagtttggaacact------------------gttaggagaaagca |
95 |
Q |
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| T |
41623494 |
gaaggtgaagacggtgaatcttctaattcaaacccatttgttacttggtttactgagtttggaacactaaaatcttgcagaaaggtgttaggagaaagca |
41623395 |
T |
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| Q |
96 |
tattgaaacaaggctaatatcaaaattgaaacaaaaaactcagactcttacaatatatgttttggaagattgtgtctcagaagccaaaaatattcatctg |
195 |
Q |
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| T |
41623394 |
tattgaaacaaggctaatatcaaaattgaaacaaaaaactcagactcttacaatatatgttttggaagattgtgtctcagaagccaaaaatattcatctg |
41623295 |
T |
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| Q |
196 |
attaggaaaactatgatgaatcaactaaaccat |
228 |
Q |
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| T |
41623294 |
attaggaaaactttgatgaatcaactaaaccat |
41623262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 41626455 - 41626227
Alignment:
| Q |
14 |
gaaggtgaagacggtgaatcttctaattcaaacccatttgttacttggtttactgagtttggaacact------------------gttaggagaaagca |
95 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
41626455 |
gaaggtgaagatggtgaatcttctaattcaaacccatttgttacttggtttactgagtttggaacactaaaatcttgcagaaaggtgtttggagaaagca |
41626356 |
T |
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| Q |
96 |
tattgaaacaaggctaatatcaaaattgaaacaaaaaactcagactcttacaatatatgttttggaagattgtgtctcagaagccaaaaatattcatctg |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
41626355 |
tattgaaacaaggctaatatcaaaattgaaacaaaaaattcagactcttacaatatatgttttggaagattgtgtctgagaagccaagaatattcatctg |
41626256 |
T |
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| Q |
196 |
attaggaaaactatgatgaatcaactaaa |
224 |
Q |
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| T |
41626255 |
attaggaaaactttgatgaatcaactaaa |
41626227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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