View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11214_low_21 (Length: 202)
Name: NF11214_low_21
Description: NF11214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11214_low_21 |
 | |
|
| [»] scaffold0037 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 42295524 - 42295357
Alignment:
| Q |
17 |
agaagtgatttgtagtatttttcgtcaattaaaataggtgtaccaatagcctcaacaatctcaaaaaggaatttagggtgccaatactccagagggagat |
116 |
Q |
| |
|
|||||||| ||||| |||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42295524 |
agaagtgaattgtattatttt-cgtcaattaaaataggtgtaccaatagccccagcaatctcaaaaaggaatttagggtgccaatactctagagggagat |
42295426 |
T |
|
| Q |
117 |
aatggaaacgaacccatacttgactatgagtttgattatgattaaaggaattaaaatctagtgaccaac |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42295425 |
aatggaaacgaacccatacttgactatgagtttgattatgattaaaggaattaaaatctagtgaccaac |
42295357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 9e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 41 - 185
Target Start/End: Complemental strand, 20424444 - 20424300
Alignment:
| Q |
41 |
tcaattaaaataggtgtaccaatagcctcaacaatctcaaaaaggaatttagggtgccaatactccagagggagataatggaaacgaacccatacttgac |
140 |
Q |
| |
|
|||||||||||||| |||||||||||| | ||||||||||||| | |||| |||||||| ||||||||||||||||| ||||| | ||| || |||| |
|
|
| T |
20424444 |
tcaattaaaataggcgtaccaatagcccctgcaatctcaaaaagagttataggttgccaatattccagagggagataatgaaaacgcaaccaaacctgac |
20424345 |
T |
|
| Q |
141 |
tatgagtttgattatgattaaaggaattaaaatctagtgaccaac |
185 |
Q |
| |
|
|||||||||| || |||||||| ||||||||||| ||||||||| |
|
|
| T |
20424344 |
tatgagtttgtttctgattaaatgaattaaaatccggtgaccaac |
20424300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 151
Target Start/End: Original strand, 43805934 - 43806044
Alignment:
| Q |
41 |
tcaattaaaataggtgtaccaatagcctcaacaatctcaaaaaggaatttagggtgccaatactccagagggagataatggaaacgaacccatacttgac |
140 |
Q |
| |
|
||||||| ||||| ||||||||||| || ||||||||||||||| | || |||||||| |||||||| | |||||| ||||| || |||||||||| |
|
|
| T |
43805934 |
tcaattattataggggtaccaatagcaccagcaatctcaaaaaggattctatcttgccaatattccagaggaaaataatgaaaacgcactcatacttgac |
43806033 |
T |
|
| Q |
141 |
tatgagtttga |
151 |
Q |
| |
|
||||||||||| |
|
|
| T |
43806034 |
tatgagtttga |
43806044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 47 - 185
Target Start/End: Complemental strand, 11367862 - 11367724
Alignment:
| Q |
47 |
aaaataggtgtaccaatagcctcaacaatctcaaaaaggaatttagggtgccaatactccagagggagataatggaaacgaacccatacttgactatgag |
146 |
Q |
| |
|
||||||||||| ||||||| | | ||||||| ||||||| | | || |||||||| |||||||| |||||||| ||||| |||||||| || ||||||| |
|
|
| T |
11367862 |
aaaataggtgtgccaatagtccctgcaatctcgaaaaggattctcggatgccaatattccagaggaagataatgaaaacgcacccatacctggctatgag |
11367763 |
T |
|
| Q |
147 |
tttgattatgattaaaggaattaaaatctagtgaccaac |
185 |
Q |
| |
|
|||||||||||||||| | ||||||||| ||||||||| |
|
|
| T |
11367762 |
tttgattatgattaaatggattaaaatcaggtgaccaac |
11367724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 175
Target Start/End: Complemental strand, 21407877 - 21407797
Alignment:
| Q |
95 |
tgccaatactccagagggagataatggaaacgaacccatacttgactatgagtttgattatgattaaaggaattaaaatct |
175 |
Q |
| |
|
|||||||| |||| ||| ||||||| ||| | |||||||| || |||||||||||| | ||| |||||| |||||||||| |
|
|
| T |
21407877 |
tgccaatattccataggaagataattaaaatgcacccatacctgcctatgagtttgagtctgaataaagggattaaaatct |
21407797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 174
Target Start/End: Complemental strand, 20424331 - 20424198
Alignment:
| Q |
41 |
tcaattaaaataggtgtaccaatagcctcaacaatctcaaaaaggaatttagggtgccaatactccagagggagataatggaaacgaacccatacttgac |
140 |
Q |
| |
|
||||||| |||||| |||||||| ||| || | ||||||||||||| | || |||||||| ||||| || |||||||| || || |||||||| |||| |
|
|
| T |
20424331 |
tcaattataataggcgtaccaatggccccagcgatctcaaaaaggattctatcttgccaatattccagtggaagataatgaaatcgtacccatacctgac |
20424232 |
T |
|
| Q |
141 |
tatgagtttgattatgattaaaggaattaaaatc |
174 |
Q |
| |
|
||| |||||| | |||||| ||| ||||||||| |
|
|
| T |
20424231 |
tattggtttgagtctgattagagggattaaaatc |
20424198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 50 - 174
Target Start/End: Complemental strand, 49046345 - 49046221
Alignment:
| Q |
50 |
ataggtgtaccaatagcctcaacaatctcaaaaaggaatttagggtgccaatactccagagggagataatggaaacgaacccatacttgactatgagttt |
149 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||| | || |||||||| |||| || |||||||| |||| ||||||| |||||||| |||| |
|
|
| T |
49046345 |
ataggggtaccaatagcctcatcaatctcaaaaaggattctatcatgccaatattccaatggaagataatgaaaacatacccatatctgactatgggttt |
49046246 |
T |
|
| Q |
150 |
gattatgattaaaggaattaaaatc |
174 |
Q |
| |
|
|| | |||||| || ||||||||| |
|
|
| T |
49046245 |
gagtctgattagagagattaaaatc |
49046221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 150
Target Start/End: Original strand, 13188047 - 13188147
Alignment:
| Q |
50 |
ataggtgtaccaatagcctcaacaatctcaaaaaggaatt-tagggtgccaatactccagagggagataatggaaacgaacccatacttgactatgagtt |
148 |
Q |
| |
|
||||| || ||||||||| ||||||||||||| | |||| |||| |||||||| |||| ||| |||||||| |||| ||||||||| ||||||||||| |
|
|
| T |
13188047 |
ataggcgtgccaatagccccaacaatctcaaat-gaaattctaggttgccaatattccaaaggaagataatgaaaacaaacccatacccgactatgagtt |
13188145 |
T |
|
| Q |
149 |
tg |
150 |
Q |
| |
|
|| |
|
|
| T |
13188146 |
tg |
13188147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 95 - 150
Target Start/End: Complemental strand, 109079 - 109024
Alignment:
| Q |
95 |
tgccaatactccagagggagataatggaaacgaacccatacttgactatgagtttg |
150 |
Q |
| |
|
||||||||||| ||||| ||||||| ||||| |||||||| |||||||||||||| |
|
|
| T |
109079 |
tgccaatactctagaggaagataataaaaacggacccatacctgactatgagtttg |
109024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University