View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11214_low_3 (Length: 627)
Name: NF11214_low_3
Description: NF11214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11214_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 19 - 617
Target Start/End: Complemental strand, 40765795 - 40765197
Alignment:
| Q |
19 |
taatatttttcaggccagtggcaaaaagaatcatcctttcaaagccaagaccgaatccagcatgtttcaccgttccataccgcctaaggtcaatgtacca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40765795 |
taatatttttcaggccagtggcaaaaagaatcatcctttcaaagccaagaccgaatccagcatgtttcaccgttccataccgcctaaggtcaatgtacca |
40765696 |
T |
|
| Q |
119 |
ttcatatggctcaacaggcaaatccatctcctttagtctgtaacattataacaatagaaacaaggaaaataaagtnnnnnnntccttaacgagagcacat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
40765695 |
ttcatatggctcaacaggcaaatccatctcctttagtctgtaacattataacaatagaaacaaggaaaataaag-caaagaatccttaacaagagcacat |
40765597 |
T |
|
| Q |
219 |
ttatttatgaatcaggataagcagaaattataatttacctttgttgaatgacatcataacgctcctccctttggcctccaccaagtaactctcccacctg |
318 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40765596 |
ttatttatgaatcaggataagcggaaattataatttacctttgttgaatgacatcataacgctcctccctttggcctccaccaattaactctcccacctg |
40765497 |
T |
|
| Q |
319 |
aaattacagttacaaattccaattacgccaaa-acaaaagcaactaggtataacatatacaactcatctgtacccccgctcagtatcataataagtaaat |
417 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40765496 |
aaattacagttacaaattccaattacgccaaccacaaaagcaactaggtataacatatacaactcatctgtacccccgctcagtatcataatgagtaaat |
40765397 |
T |
|
| Q |
418 |
cacatttctcgatctctctttatttctaattctcgtctacactgcttactatgatgataagacttctatagttcttttcccaagcaccatagacatgtta |
517 |
Q |
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| T |
40765396 |
cacatttctcgatctctctttatttctaattctcgtctacactgcttactatgatgataggacttctatagttcttttcccaagcaccatagacatgtta |
40765297 |
T |
|
| Q |
518 |
aaataaaacaaacagaatacatacatttgggacaagaacatccatagcagccactgtctttaagtcatcattgaggcgcatgtagaatgctttgcctttg |
617 |
Q |
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| T |
40765296 |
aaataaaacaaacagaatacatacatttgggacaagaacatccatagcagccactgtctttaagtcatcattgaggcgcatgtagaatgctttgcctttg |
40765197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 2e-81; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 422 - 611
Target Start/End: Complemental strand, 42912939 - 42912750
Alignment:
| Q |
422 |
tttctcgatctctctttatttctaattctcgtctacactgcttactatgatgataagacttctatagttcttttcccaagcaccatagacatgttaaaat |
521 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42912939 |
tttctcgatctctctttatttctaattctcgtctacactgcttactacgatggtaggacttctgtagttcttttcccaagcaccatagacatgttaaaat |
42912840 |
T |
|
| Q |
522 |
aaaacaaacagaatacatacatttgggacaagaacatccatagcagccactgtctttaagtcatcattgaggcgcatgtagaatgctttg |
611 |
Q |
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|||| | |||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42912839 |
aaaatatacaggatacatacctttgggacaagaacatccatagcagccactgtctctaagtcatcattgaggcgcatgtagaatgctttg |
42912750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 42914473 - 42914323
Alignment:
| Q |
19 |
taatatttttcaggccagtggcaaaaagaatcatcctttcaaagccaagaccgaatccagcatgtttcaccgttccataccgcctaaggtcaatgtacca |
118 |
Q |
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||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||| |
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| T |
42914473 |
taatattttccaggccagtagcaaaaagaatcatcctttcaaagccaagaccgaatccagcatgtttcactgttccataccgcctcagatcaatgtacca |
42914374 |
T |
|
| Q |
119 |
ttcatatggctcaacaggcaaatccatctcctttagtctgtaacattataa |
169 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
42914373 |
ttcatatggctcaacaggcagatccatctcctctagtctgtaacattataa |
42914323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 210 - 368
Target Start/End: Complemental strand, 42914256 - 42914097
Alignment:
| Q |
210 |
agagcacatttatttatgaatcaggataagcagaaattataatttacctttgttgaatgacatcataacgctcctccctttggcctccaccaagtaactc |
309 |
Q |
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|||||| ||||||||| |||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
42914256 |
agagcaaatttatttaagaattagggtaagcggaaattataatttacctttgttgaatgacatcataacgctcctccctttggcttccaccaattaactc |
42914157 |
T |
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| Q |
310 |
tcccacctgaaattacagttacaaattccaattacgccaa-aacaaaagcaactaggtat |
368 |
Q |
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||| ||||||||||||||||||| |||| |||||||||| |||||||||||||||||| |
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| T |
42914156 |
tccaacctgaaattacagttacactttcctattacgccaaccacaaaagcaactaggtat |
42914097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 368 - 424
Target Start/End: Complemental strand, 42913047 - 42912991
Alignment:
| Q |
368 |
taacatatacaactcatctgtacccccgctcagtatcataataagtaaatcacattt |
424 |
Q |
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||||||||| ||||||| ||||||||||||||||||||||| ||||||||| ||||| |
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| T |
42913047 |
taacatatataactcatatgtacccccgctcagtatcataacaagtaaatcgcattt |
42912991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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