View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11214_low_4 (Length: 625)
Name: NF11214_low_4
Description: NF11214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11214_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 571; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 20 - 617
Target Start/End: Complemental strand, 55709346 - 55708748
Alignment:
| Q |
20 |
ccatatccttaacattttt-ctttcagtaattcaaatttatcctccctaaaagaagaggcatttgatctttaacagatggggcctaacggttactgtcta |
118 |
Q |
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| T |
55709346 |
ccatatccttaacattttttctttcagtaattcaaattaatcctccctaaaagaagaggcatttgatctttaacagatggggcctaacggttactgtcta |
55709247 |
T |
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| Q |
119 |
gtgcaatgtcatgttatatatcaaaatgagaacaagtttcaaatatttggtttgaacagtaaatattaaaatatatgttaattaagtgctttgttttctt |
218 |
Q |
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| T |
55709246 |
gtgcaatgtcatgttatatatcaaaatgagaacaagtttcaaatatttggtttgaacagtaaatattaaaatatatgttaattaagtgctttgttttctt |
55709147 |
T |
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| Q |
219 |
taagtttgtaacgaatacatgtttgatttactaattagacgcaaagatagcagtcattttatacctgagtagattgaacaaccatggttcaagcaatttt |
318 |
Q |
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| T |
55709146 |
taagtttgtaacgaatacatgtttgatttactaattagacgcaaagatagcagtcattttatacctgagtagattgaacaaccatggttcaagcaatttc |
55709047 |
T |
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| Q |
319 |
ttctagaacttgcaacaatttcagctaaattattttgagatatagattcttgttgtggcaagctgaacaattggaagagctagcctgaccaccaggatca |
418 |
Q |
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| T |
55709046 |
ttctagaacttgcaacaatttcagctaaattattttgagatatagattcttgttgtggcaagctgaacaattggaagagctagcctgatcaccaggatca |
55708947 |
T |
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| Q |
419 |
tcaagattttccatgggcttcaatgacaaaactgaggagcttgcttgatatgcattgcgttgtctgaagcaaaacaagccagaaaaaacctgcagaagcg |
518 |
Q |
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| T |
55708946 |
tcaagattttccatgggcttcaatgacaaaactgaggagcttgcttgatatgcattgcgttgcctgaagcaaaacaagccagaaaaaacctgcagaagcg |
55708847 |
T |
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| Q |
519 |
caatcagcacatgcaattgtaaattagtcaaattggaacaggaaagtgcaaaaatacaaaacaaacttaatggtgcatcaagattcataacagttcatt |
617 |
Q |
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| T |
55708846 |
caatcagcacatgcaattgtaaattagtcaaattggaacaggaaagtgcaaaaatagaaaacaaacttaatggtgcatcaagattcataacagttcatt |
55708748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 244 - 583
Target Start/End: Complemental strand, 49444909 - 49444570
Alignment:
| Q |
244 |
atttactaattagacgcaaagatagcagtcattttatacctgagtagattgaacaaccatggttcaagcaattttttctagaacttgcaacaatttcagc |
343 |
Q |
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| T |
49444909 |
atttactaattaggcgcaaagaaagcag-cgttctatacctgagtagcttgaacaaccatggttcgggct-tttcttctagaactttcaacaatttcagc |
49444812 |
T |
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| Q |
344 |
taaattattttgagatatagattcttg-ttgtggcaagctgaacaattggaagagctagcctgaccaccaggatcatcaagattttccatgggcttcaat |
442 |
Q |
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| T |
49444811 |
tatgtgactttgagatatagattcttggttgtggcaagctgagcaattggaagagctagcgtgaccaccaggatcctctaaatttgcaatgggcttcaat |
49444712 |
T |
|
| Q |
443 |
gacaaaactgaggagcttgcttgatatgcattgcgttgtctgaagcaaaacaagccagaaaaaacctgcagaagc-gcaatcagcacatgcaattgtaaa |
541 |
Q |
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| T |
49444711 |
gacaaaactgaggagcttgcttgatatgcattgcgttgcctcaagcaaaataagctagaagaaacctgcagaagcggcaatcaacacatgcaattgtaaa |
49444612 |
T |
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| Q |
542 |
ttagtcaaattggaacaggaaagtgcaaaaatacaaaacaaa |
583 |
Q |
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| T |
49444611 |
ttattcaaattggaacagtaaggtgaaaaagtagaaaacaaa |
49444570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 38 - 186
Target Start/End: Complemental strand, 49445381 - 49445225
Alignment:
| Q |
38 |
tctttcagtaattcaaatttatcctccctaaaagaagaggcatttgatctttaacagatggggcctaacggttactgtctagtgca--------atgtca |
129 |
Q |
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| T |
49445381 |
tctttcagtaatccaaattaatcctccctaaaagacgaggcatttgacctttaacagatgaggccaaactgtaactgtctagtgcagtgtatgcaggtca |
49445282 |
T |
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| Q |
130 |
tgttatatatcaaaatgagaacaagtttcaaatatttggtttgaacagtaaatatta |
186 |
Q |
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| T |
49445281 |
tgttatacatcaaaatgagagcaagtttcaaacatttggcttaagtagtaaatatta |
49445225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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