View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11214_low_6 (Length: 565)
Name: NF11214_low_6
Description: NF11214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11214_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 122 - 549
Target Start/End: Original strand, 36970419 - 36970847
Alignment:
| Q |
122 |
tacagtgctttatatcaaagatagaagaaaggaaagccccttaattttaatttgcaagtaaattaattacctcacatacatccaacaaaattagaaatgt |
221 |
Q |
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| T |
36970419 |
tacagtgctttatatcaaagatagaagaaaggaaagcaccttaattttaatttgcaagtaaattaattacctcacatacatccaacaaaattagaaatgt |
36970518 |
T |
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| Q |
222 |
tcttcttcattgattccatcttcagaaaaggaaaggaactacaaatgaactccaagattgatttgaaggagcaaaccctacttaaagatacgctagaaaa |
321 |
Q |
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| T |
36970519 |
tcttcttcattgattccatcttcagaaaaggaaaggaactacatattaactccaagattgatttgaaggagcaaaccctacttaaagatactctagaaaa |
36970618 |
T |
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| Q |
322 |
gcgtggattttatgagttctcttttgtagtccaatccgtaacgaaatagaagc-nnnnnnncatttgacttttaaaacccttttaactgcttatattttc |
420 |
Q |
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| T |
36970619 |
gcatggattttatgagttctcttttgtagtccaatccgtaacgaaatagaagcaaaaaaaacatttgacttttaaaacccttttaactgcttgtattttc |
36970718 |
T |
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| Q |
421 |
ttaccgatgactactatgtttggtacttggatttgttgcatcttcttcaaacttgtcttttgcagtttcatgaagtttgttctgatttattctaataagt |
520 |
Q |
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| T |
36970719 |
ttaccgatgactactatgtttggtacttggatttgttgcatcttcttcaaacttgtcttttgcagtttcatgaagtttgttctgatttattctaataagt |
36970818 |
T |
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| Q |
521 |
tcagcttgtctgaatttatacaagtacct |
549 |
Q |
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| T |
36970819 |
tcagcttgtctgaatttatacaagtacct |
36970847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 36970312 - 36970397
Alignment:
| Q |
11 |
cacagatctatatattaatgtttttatatcaatgatgtactatatcctgttcattcttaatagtttataccataagaagcacagaa |
96 |
Q |
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| T |
36970312 |
cacagatctatatattaatgtttttatatcaatgatgtactatatcctgttcattcttaatagtttataccataagaagcacagaa |
36970397 |
T |
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